MmuEX0032524 @ mm9
Exon Skipping
Gene
ENSMUSG00000070564 | Ntn5
Description
netrin 5 [Source:MGI Symbol;Acc:MGI:2685330]
Coordinates
chr7:52939784-52949924:+
Coord C1 exon
chr7:52939784-52939868
Coord A exon
chr7:52941551-52942195
Coord C2 exon
chr7:52949344-52949924
Length
645 bp
Sequences
Splice sites
3' ss Seq
TCTGCCACCTCTGTCTACAGGTG
3' ss Score
11
5' ss Seq
TGCGTAAGT
5' ss Score
9.73
Exon sequences
Seq C1 exon
TCACTCCTCCCGAGAGCCCTCCAAGTGCTTCTCCTACAGAAGAGTGTGGGGATGACCGACTACAGGACACTCTTTTCTTCTCCAG
Seq A exon
GTGCCGGCTCTACTGTGACCACGCCCATTACCCTCAGCCTCTTGCTCCTCCTTAGCCAGGCCACCTCAGACCCATGCTATGATCCAGGAGGGCGCCCTCGCTTTTGCCTCCCACCAGTGACCCAGTTGGTTGGCAAGGCAGCAGCCCCCTGCTCTCAGACCTGTGCTCTTCCTGCAGCCAGCCCTGGCCCTGCCTGCAACAGTAGTCTGACCCTGGACCTGGACGGCTCCTTCCTCTTGACATCTGTGACCCTGCGTTTCTGCACAGCGGGACCTCCAGCCCTGGTTCTTTCTGCTGCCTGGGCCACTGGGGGGCCCTGGAGGCCACTATGGCGTAGGCCTGCCTGGCCTGGGGCTCTGGGGGGCCCCAAGAAGGTAACCTTTCACTCCCCCCCAGGCCCCAAGACCAGGATAGTGGCCAGCTACCTCCGTGTGGAGTTCGGGGGAAAAGCAGGGCTGGTGACCACTGGAGTAAGAGGCCGCTGCCAGTGCCACGGCCACGCTGCCCGCTGTGCCACTCGGGCCCAGCCCCCACGCTGCCGCTGCCGCCACCACACCACTGGCCCAGGGTGTGAGAGCTGTCGCCCATCCCATCGAGACTGGCCCTGGCGACCTGCCACACCCCAGCACCCTCACCCGTGCTTGC
Seq C2 exon
CTGAGGTGGTGTCTTCCCTCAGTTCTGCACGCCCAGGTTTCAGCGTCGTCGTCGCAGCCGTCTGAGGCGGTGGGCCCCGAGTGGTGGCGGCTGGCCGTGCACGTGCTGGCTGTGTTCAAACAGCGTGCGTGGCCCGTGCGCCGCGGTGGCCAGGAGGCCTGGGTGCCACGTGCTGACCTAATCTGCGGCTGCCTGCGCCTGCGCCCTGGCGCTGACTACCTCCTGCTGGGCCGTGCTGCGCAGACCCACGACGACGACAACTATGACCCTGCGCGCCTCATCCTGAACCGCCACGGCCTCGCGCTGCCCTGGAGACCACGATGGGCCCGGCCGCTGCGGCGACTGCAGCAGAAGGAGCGCGGAGGTGCCTGCCGAGGCCTGCTGCCACCCACACGGAGCCCTGGGCCCAGGAACTAAAGTGAGCTACTAATGTAAGGTGTGAGTCCCCAGAGCCAATCAGAAGCTTCAGTGCCCGTGACGCCACTCCGCATGTGACGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070564_MULTIEX1-2/7=C1-C2
Average complexity
ME(1-2[100=100])
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.071 C2=0.124
Domain overlap (PFAM):
C1:
NO
A:
PF0005319=Laminin_EGF=WD(100=24.5)
C2:
PF0175916=NTR=PD(92.4=82.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTCCAAGTGCTTCTCCTA
R:
GCAGGGTCATAGTTGTCGTCG
Band lengths:
342-987
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: