MmuEX0032526 @ mm9
Exon Skipping
Gene
ENSMUSG00000070564 | Ntn5
Description
netrin 5 [Source:MGI Symbol;Acc:MGI:2685330]
Coordinates
chr7:52946417-52949924:+
Coord C1 exon
chr7:52946417-52946605
Coord A exon
chr7:52946782-52946931
Coord C2 exon
chr7:52949344-52949924
Length
150 bp
Sequences
Splice sites
3' ss Seq
TCTTGTGTTTTGTCACGAAGCCT
3' ss Score
3.81
5' ss Seq
AACGTGAGT
5' ss Score
9.54
Exon sequences
Seq C1 exon
CCTGTTCCTGCAATCAGCATGCCCGCCGCTGCCGATTCAACTCCGAGCTATTCAGGTTGTCAGGTGGCCGTAGTGGGGGTGTGTGTGAGCGGTGCCGCCACCACACAGCTGGGCGGCACTGTCACTACTGCCAGCCAGGGTTCTGGAGGGACCCGAGCCAGCCCATCACTAGTCACAAGGCATGCAGGG
Seq A exon
CCTGCCAGTGCCACCCAATTGGAGCAACGGGAGGGATGTGCAACCAGACCAGTGGCCAGTGCTCCTGCAAGTTAGGGGTCACAGGCCTGACATGCAATCGCTGTGGTCCTGGCTACCAGCAGAGCCGCTCACCCAGGATGCCCTGCCAAC
Seq C2 exon
CTGAGGTGGTGTCTTCCCTCAGTTCTGCACGCCCAGGTTTCAGCGTCGTCGTCGCAGCCGTCTGAGGCGGTGGGCCCCGAGTGGTGGCGGCTGGCCGTGCACGTGCTGGCTGTGTTCAAACAGCGTGCGTGGCCCGTGCGCCGCGGTGGCCAGGAGGCCTGGGTGCCACGTGCTGACCTAATCTGCGGCTGCCTGCGCCTGCGCCCTGGCGCTGACTACCTCCTGCTGGGCCGTGCTGCGCAGACCCACGACGACGACAACTATGACCCTGCGCGCCTCATCCTGAACCGCCACGGCCTCGCGCTGCCCTGGAGACCACGATGGGCCCGGCCGCTGCGGCGACTGCAGCAGAAGGAGCGCGGAGGTGCCTGCCGAGGCCTGCTGCCACCCACACGGAGCCCTGGGCCCAGGAACTAAAGTGAGCTACTAATGTAAGGTGTGAGTCCCCAGAGCCAATCAGAAGCTTCAGTGCCCGTGACGCCACTCCGCATGTGACGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070564_MULTIEX1-4/7=3-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.118 C2=0.124
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=WD(100=95.3)
A:
PF0005319=Laminin_EGF=WD(100=96.1)
C2:
PF0175916=NTR=PD(92.4=82.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTCACTACTGCCAGCCA
R:
CAGATTAGGTCAGCACGTGGC
Band lengths:
257-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types