MmuEX0041417 @ mm9
Exon Skipping
Gene
ENSMUSG00000040364 | Sec1
Description
secretory blood group 1 [Source:MGI Symbol;Acc:MGI:1928893]
Coordinates
chr7:52939550-52949772:-
Coord C1 exon
chr7:52949344-52949772
Coord A exon
chr7:52940636-52940725
Coord C2 exon
chr7:52939550-52939661
Length
90 bp
Sequences
Splice sites
3' ss Seq
CTTAACCCTTTCCCCTCCAGGTG
3' ss Score
12.38
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
TAGTAGCTCACTTTAGTTCCTGGGCCCAGGGCTCCGTGTGGGTGGCAGCAGGCCTCGGCAGGCACCTCCGCGCTCCTTCTGCTGCAGTCGCCGCAGCGGCCGGGCCCATCGTGGTCTCCAGGGCAGCGCGAGGCCGTGGCGGTTCAGGATGAGGCGCGCAGGGTCATAGTTGTCGTCGTCGTGGGTCTGCGCAGCACGGCCCAGCAGGAGGTAGTCAGCGCCAGGGCGCAGGCGCAGGCAGCCGCAGATTAGGTCAGCACGTGGCACCCAGGCCTCCTGGCCACCGCGGCGCACGGGCCACGCACGCTGTTTGAACACAGCCAGCACGTGCACGGCCAGCCGCCACCACTCGGGGCCCACCGCCTCAGACGGCTGCGACGACGACGCTGAAACCTGGGCGTGCAGAACTGAGGGAAGACACCACCTCAG
Seq A exon
GTGTGTAGCCAGAGAAGAGTGCTGAGGGAAGGTGGTGCTGAAGGAGCTGGAAACCAACAAAGCCTTGGAGTTAGAGAGCAGACCCCTCAG
Seq C2 exon
GGACCCTTGCCAGCCATGCCACCCGAGACTGCGTGGGACAGGAGCACTGTCGCCCCCAGCAGGCTTGAAGCTTGGTGGCCCCAAACAAGCCGGCCTAGAAGGATCCAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040364-'0-2,'0-0,1-2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.030
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTTTGAACACAGCCAGCAC
R:
CTCCTGTCCCACGCAGTCTC
Band lengths:
167-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: