MmuINT0111269 @ mm9
Intron Retention
Gene
ENSMUSG00000070564 | Ntn5
Description
netrin 5 [Source:MGI Symbol;Acc:MGI:2685330]
Coordinates
chr7:52941551-52946931:+
Coord C1 exon
chr7:52941551-52942195
Coord A exon
chr7:52942196-52946781
Coord C2 exon
chr7:52946782-52946931
Length
4586 bp
Sequences
Splice sites
5' ss Seq
TGCGTAAGT
5' ss Score
9.73
3' ss Seq
TCTTGTGTTTTGTCACGAAGCCT
3' ss Score
3.81
Exon sequences
Seq C1 exon
GTGCCGGCTCTACTGTGACCACGCCCATTACCCTCAGCCTCTTGCTCCTCCTTAGCCAGGCCACCTCAGACCCATGCTATGATCCAGGAGGGCGCCCTCGCTTTTGCCTCCCACCAGTGACCCAGTTGGTTGGCAAGGCAGCAGCCCCCTGCTCTCAGACCTGTGCTCTTCCTGCAGCCAGCCCTGGCCCTGCCTGCAACAGTAGTCTGACCCTGGACCTGGACGGCTCCTTCCTCTTGACATCTGTGACCCTGCGTTTCTGCACAGCGGGACCTCCAGCCCTGGTTCTTTCTGCTGCCTGGGCCACTGGGGGGCCCTGGAGGCCACTATGGCGTAGGCCTGCCTGGCCTGGGGCTCTGGGGGGCCCCAAGAAGGTAACCTTTCACTCCCCCCCAGGCCCCAAGACCAGGATAGTGGCCAGCTACCTCCGTGTGGAGTTCGGGGGAAAAGCAGGGCTGGTGACCACTGGAGTAAGAGGCCGCTGCCAGTGCCACGGCCACGCTGCCCGCTGTGCCACTCGGGCCCAGCCCCCACGCTGCCGCTGCCGCCACCACACCACTGGCCCAGGGTGTGAGAGCTGTCGCCCATCCCATCGAGACTGGCCCTGGCGACCTGCCACACCCCAGCACCCTCACCCGTGCTTGC
Seq A exon
GTAAGTCATGGGTCTTGCCCCCAATCCTTGACACTACTTGGCCCCCTGGGACAGCATGCCAACATACATTGACCCCTTGTTCCAAAGCATGCAAACTGTTCTCTTCCCTTCAGAAATGCTTTTCCTCCCTTGCTCTCACAGTGTGCTGTGGTCCGGTTCTCTTTCCTTGTTTGCCAAGCATGTCAGACACACAGACACACAGAGAAACACACACACACACACACACACACACAGGAAACCCTCTGTCAGGGACTCCACCCACCAGATGTAACCAGTAGGCGCACTAAAGCAGTCCTGGGAAGATCATATCCCAGGGTCTGGTGTGGCACTGGGTTTGGGCAAGGGTACAGGCAGACATAGTTCCTGACTCCTGGGAGAGCCGGCACAGGGGATATTTAATCATGAAACATTCTGATGGCCCACCAGCTGCCAGCCTACTGTCCTGTTGAGGAGACTGTAGCCATTATTCACTAACACAAAGCCACGCTGTATGACCTGCTATGACCATCTGCCCAGCTCCCAGTGGGTGCTGCCATACTAGGTGAGCCTAAACACAACTAGGAGCAGCTGTAGCAGACAGCCTGGCCCAGTTTCGGCTCCTCTGCTCAGTTACGTGGTCTCAGGCAAGGGACCTGACCTCTCTGTACCTGTTTTCTCATCCTATAAAGTGGCTTAAGAACACTGTCCTTAAGGCTGCAGAGATCCAGGGAGCCTCCTCTGAGCACCTCCATGAGTGACCTTCCCAGGTAAAAAGGAGCCTGGCAGGATGCAGAGCTAAGATGATTCTTAGGGACTTGTCTTCCTAGGTGCTGCCACCCCCAGAACACGCTCTGGCCTCTCTTCCTCCGGCCACACTGTCAGCTCTGTTGATTGTGACCGTGCCCTGATATTTTTCCCTCTTGAAGAAAGAAAGTATTTTAGTAGAGCCCACAGCTAACAGACTTAATTGTAAAGGGACTTTGAATTTTAAAAGAGATTGGATGTTTTAAAAGGATTGAAATTTTAATATGTAAGAATTTGCAAAGATTGTGGACTTTTAAAGTTATTTAGATCTTGGGGATGAATAAGAAAGTAAGGGTGAGAGAATTCTGCCAATTTCTAAGTATATCTATCCCAATTATCCATTCTGGGACTGGGGAAATGACCACAGGATGTGTCTGGGGACCTACTGGGCCTACTGTGAGTCAGGCATCAGTCAAAACTCCATTAATCACCTGTCCTCCATAAGCCCCTACAACTTTACCTGGAGGCCCACAATGTTTCTTGGGATCTCCTGGGACCAGTGTCAACTCAGAGCCAGTATCCAGCAGACCCCGGAAAGTCTGATTGTTTCCTTTCCCCCAGTGCAGTTACCCTTGTAAAAGGCCGCAGGTCCCTCTGGGGAAGAACTGGAGAAAGGCGAACAGCAAAACTTTTAGGTGTCTCATTGAGATCCTTCCTCAGGGGACCCTGGCCACCCCTTTAATCCGGGGGTTCTGGATCTGCAAACTGGCTCAAGTCTGGAAATTGATTCACTGGCCGAGATTGCCTTTTGCCACGATCCAATGTAGCCTTTCTTTCATTTGAGAATTTTTCTGCTTATACAGATCAAACAGATATGAAACAAACTTCTGACACCTTTTTTAACTGTGCAAGCTTCCATATTAAACCTAGAATCTCTACTCAGAGGACCCATGTCAATAAACTCAGCCTGCTCTAGTTTTATGCTCCTTCCACCATTATCCCACACCCTTAAAATCCCTTCCCACACATATTCCCCAGACTTCTGCTTGAATGAATTAGCAAACTCATTAAGCTCCTTAGTAGCATCATGGACTACACTTTCTACCTCCCCTCTAGGGGCCTGTTTTGCCTTGAGTCTGGCTATAGGTCTAGAAGAAACTATTGGTGGGCCTTGAGAAACATCAGTATTGTCTTGTCTGGCATTTTCTTCTGCGAAAGTCACTGTTGGTTTATCCGACTCTGGGGATTAATTCCCTCATGTGGGGAAGACATTATTACTTCAAGGGGTGGGGCTGAGGGTACTACTTCCTCAGGTGAGGCAAGCCCGTGAGAATCTGAAGATTCAAAATTCTCAGCTTCGACACATCCCCATCCCAAGTTTAGGAGCTCTGTCTGTGACCTTGGAAGGAGAGCTAAATACCTTCAGGCTCATGGGCAATTAATCCACTGACAGACAGACAGGTGCAGACAGACACACACACTTCTCAGATTTCAGGGAAACCAGTGTCCCAGCCTTCTGCCCTCCACCACCCCAGGGACCAGCAGAGGAGACCCACGTACCCTGACGCTGGGGTAGGCTTCATGCAGGGCTTGGACAGGGGCTGGATGCTAGGGAGGCTGTATCCCTGAGTGTGACCCATGTTAAGAGAAAGACAGTCCGCCCTGGGAACCTGGATGAGAGGCAGTGACACGTTCCTGTGGCTTTATAGCGGAGTGGCTTGACTGAGGGGGAAGTGAGACAAAGCCATTACCATGCTCTGGGTCAGAAAGGAGCTAGCACAGAGGCACTCGAGTCACCCTTGCCACTCAGAATCACCCAACCCCCTGGGAGACAGCAGAGAGCCTCCCTGGACAGGGAACAACAGAGGCTCAGGGGAGGGACTCATTTTCTCAAGGACATACAGCTACCCTTACCATAAGACTCCCCTGCTCTGCTCCAGGCCAGGCTCTCAGCCTCTAAGTCACATCTTTTCTTAGCATGGCCAGGTCTTCGGCTTTAACTTCTCTCTGGAATTCCTGGTAGAAGTACAGGCCTGTGGATGCTGGATGAGCCCTCAATTTATGTGGGTGGGGTTTTGTTGTTTTAGGGTTTTCTTTTCTTTTTCACAATGTCTCACCATGCAGTCTTCACGGCCTGGAACTATGTAGACCTGGCTGGCCTTGAACTCATGGAGATCCACCTGCCTTTTAATCCTGCGTGCTGGGATTAAAAGTGTGCCCACCACGCCCGGCAGGTTATGCGGTTTTCAAGACCTCTCCAGGCTCTCCTGCCCATCAGTCCTCAGGAGGCAGAAGCAAGGTCAGAAGTTCTAGGTCGGTCGGGGCTTCACGCGGGAGGAGCTCTCCCCTGAGCTGGTTCTCCTCCACCAGACAGACAGATACACCGGGTTTCCTAGTGTTTCTGATAAGCAGGGGGTGTGGGAGGCACAGAAGTCCTTGTGCTCACGGACGAGCACTGGGGGAGCCAGGAATAGTTACAACACGGGTTGTCTCTTCACAGGAAGAGATGTGTCACCCGCTTCCCACCCAGAAGGTTGGGAATGGACATGGTTGATATCCTGGTGACCTTTGCATCACCCCGGATCCTCCCCAGCACCCTCACCTCGGGGTTGTTTTCTTAGTTAAATCTTTGCAAAAGATTTTCACTTGTGCTTTACAAGGGGTTTTCACGTCTTAAGCTGCTTTGCACACAGGACTGGGTTCACTGTCACCAGGACACTTCACCACATTGTGCTGTGCTTAATTAACTATGCCTAAAATAAGCTACTCGGGGTCAGACTCTCAGTGTGAACCAGCGCCAGCTACCGAGTCATGTTGAACAGAACTATCTTCTTACCGCCCATGGATTGTTACCCAGCTGGCTGTGGTGGTCAAAGAGACCCCTGCAGTGGGGTTAGACAGTCACTGCCTTCAGGAATCTGAAAGATGCTCTCAGAAAAAGGCACATGTTTAACAAGCCTGTGGGCCCTGTGGAAGCTCACGGAGTGCTGACACAGCTCAGATGTTGCTTCTGGCTCTCTCGGGGGAGCACTGCCTTGGGCAGGTGACTTCACCTCTCTGTCTCATTCCCCCAACTGTGGATGGGGGTGGGGACGTCCTGGACGACATACACTTGGGCCATGGTGCCTAGTGCATCGGAGCACTATAGGCCTAGCACATGCTCTGGCCTAAGCGTTTATCTCAATCTCCCTGGACATAAACACAGCAAACGCCACCCCACAGTCTATAGAGGTACACAGCTATAGGATAGAGTGGGATTGACCCAACCCAGCCCATTCGTTCAGCACTATACCCTCCCAGGAGGGTCACAGGCTAACTGGTGACCCTTGGGATACCACCATTTATCGTGAGAATTAAGGTATCCTGGGAATGAGTCTCTAAAACCACAGAGCTGCGTTCTTTCCTGAGAACGGGAGGGTAGGAAGAAAGCTGAGGATGGGGGACGGATCTGGCCCTCATGTGCCTGGGTGACAGTTTCTGACCTCATCTTGTTCCTAGCCTGTTCCTGCAATCAGCATGCCCGCCGCTGCCGATTCAACTCCGAGCTATTCAGGTTGTCAGGTGGCCGTAGTGGGGGTGTGTGTGAGCGGTGCCGCCACCACACAGCTGGGCGGCACTGTCACTACTGCCAGCCAGGGTTCTGGAGGGACCCGAGCCAGCCCATCACTAGTCACAAGGCATGCAGGGGTGAGTGTGGCCTGAAGCCAAGCTGAAGGGGAAAGAGCAGAGCTAGGATTCTGTAATGGCAGGTACGGAGGTGGTTGTAAAGGAGGCGGAGTTTAGATTGTCGGGTTTGGGGACCAGGACATGGATTTTGTGGGGAACCTATTGGCCCCGAGTAACTCTTGTGTTTTGTCACGAAG
Seq C2 exon
CCTGCCAGTGCCACCCAATTGGAGCAACGGGAGGGATGTGCAACCAGACCAGTGGCCAGTGCTCCTGCAAGTTAGGGGTCACAGGCCTGACATGCAATCGCTGTGGTCCTGGCTACCAGCAGAGCCGCTCACCCAGGATGCCCTGCCAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070564-Ntn5:NM_001033356:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.071 A=NA C2=0.118
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=WD(100=24.5)
A:
NA
C2:
PF0005319=Laminin_EGF=WD(100=96.1)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: