GgaINT0012415 @ galGal4
Intron Retention
Gene
ENSGALG00000029072 | NTN3
Description
netrin-3 precursor [Source:RefSeq peptide;Acc:NP_001264534]
Coordinates
chr14:14022233-14027964:-
Coord C1 exon
chr14:14027776-14027964
Coord A exon
chr14:14022383-14027775
Coord C2 exon
chr14:14022233-14022382
Length
5393 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
TTCCTCCCTTTCCTGTCCAGCCT
3' ss Score
8.76
Exon sequences
Seq C1 exon
CCTGCAACTGCAACCTGCACGCTCGGCGCTGCCGCTTCAACATGGAGCTGTATAAGCTGTCCGGCAGGAAGAGCGGCGGCGTTTGCCTCAACTGCCGACACAACACGGCTGGGAGGCACTGCCACTACTGCAAGGAGGGCTTCTACCGGGACCTCAGCAAGTCCATCACGGACCGCAAGGCCTGCAAAG
Seq A exon
GTGAGCCGGGAGCGATCTGCTGCCCCGAGGGAATGAATGGTGGGGAATGGCCCTGAGCCCAGCATGTCTGCGGGTGCCCAGATCCAAGGGATGGGAGGGAGACCCCTCTGCCCCACGAGGAACTGCCCTTGGCCCTGGCACAGCTGCAGGCACAGCCATTGGTGTTGGGTGCTGGGGAGGTGTGGAGCTGTGCAGGTGCTGCAGAATGCCTGTGGCAGCTTGCTGGGGATTAGGCTGACACCAGCATAGCCTTGGCTGTAGATATACTTGGAAGTCTTCACGCTGCATCACAAAAGGATTTGTGGTGCTTCCTCACCTTGGGAGGGCTGGGATGATGCTGGCAGGGATTCCCTTCTCCCTGCTGCACTGCCATGGGTGCTGCTGGTGGGCGGCTCCGTCTGTGGGGTGCTGAGCAGCGCCGCCCATGGGCAGGGTTCATTGCCCTGAGGCATGTGGGAGCCGTTCTGGCTCCAAGCAGCGAGCACAGCCTGGTCCCACAGGTCCTTGCCCATGCCAAGCCCGAGGCTCTCCTCTCCCAGGGCTGCCCTCCCTTATCTCTCCTGCCCAGCCCTCTCTGTGCAGCCTCCATCCTTTGTGGATCCTCCAAACAATGGTCCCACCAGTGGCCGTCAGATAACAAAAAGCCACCTTGACCATCCCCCTGGACTGCTGCTGCTGTGCTGACCCCACCAGCGGGGATGGGAGCTCTGCCATGGTTTCTCCAAGGCCGGGAACTCACCCCTGATCCCATTTTTCCAGCTGAGATTGCAAGTATCTCCCGGAAGGGAGTGCGGCTTCCCCTCTGGCAGTGGTACTGTACAGATAGCAGGGAAAGCTGCTTCCGTGTGCTCTGGGGATGTGTTGGGGTGGCGGTGGAATGCTGCCAACCCCCCCCCAGCCCATCAGTGCCCTCAAAGCAGATGAGCACTTGGCCGGGTCTCTGTGTGTTTATATGGGACCTACAGCAGCTGCTGTTGCTGGTGTTGTGCAGCAACTCTGTGGCCACAGAACTGAAGTATTTGGCTTGCAGGGCTCCATGGCATGCTGGTTTCATGGGTAGGTTGGGCTCGTTTGGGGCCAGAATGCATCCAGTGTTGTCATAAATAAAAACCCTCTGTTGTCCATGCTGTATGAACCACCTTGGCTTCTCCCCATCCTTGTTCTCTCTGGGACTTTGGCAGAATGAGGCAAAGGGAAATCAGCTTTGGGCACAGCAGTCCCACAGCTGAGTCCCAGGACATGAATGTTTCCCATTGGCAGAGCTCATGCGTCCTTGGGGTGACAGTGGGAGAGGAAGAGGAGGATGCAGGATGAGGAGCACATCCTGAGGGTCTGTACACTGCATCATGGGCAGTGCTCTGATCCTGAGGAGTGCCAGGCAGGCTCCAAGGATCCTTGCTGGGGATGGCCCCCAACTTTCCCACTGTTCCGAGGATTCCATGTATTTGCACATAAGGAGGCTGAAGCAGAGGAAAAGGAGGCTGCTCTCTTCCCCTGCAGCATGCAGCACCTCCCCACAGCCTCGCCAGCCTGCTGGGACTGGAAACAGCCAGAGGTGTTGTCGTGGCACAGACCGAGGCCATGACTGAGCAGCTGTGGGATGGGATGTGATGGGATGGGACAGAGCAGGACAGCAGCAGCCCCAGCTCCTGCTGCAACACAGTCAGGCTAGAGCGGTGCAGCACAGTGGCCTTTTCCACGAGGATTTCCCCACACTGGAGCTGTGCTCGGTCCCCCCTCATCCCCAGGGGTGCCCCCAGCCCCAGGCAAGAGCCCTCCATGTGCAGGAGCAGCCAGGCAGGCAGCAGCCTCATCAGCCTGCGGTTTCAGGGAAAGCCCTGAGTCATTTCCTCTGGAGGGCAGGCAGGGGGCTGCCTAAAATGGAGCTGCAGTGAAGACCCCAGTCCAGCTGCTATCCCCACATCTGGCACACGTGCACTCTCGCCCCGCATTGCATTCCTTCTCACCCTGCCATCACCCAGTGCTGGTCCATCCAGGGAAGAGCGCTTACAGAACGAAAAATAGGAACTGAAGAATCAGGATTTTGCTAGGTGCTGCAGACAGGAAGGCTCAGCACAGCCCAGCCTTGAGGCGTGAGCATGAGCTGGCTGCGGGTTTGTGGGAACACTTCCCATTGCACTGCCCTGTGCCAGGAGCTCTGGGGCAACGTCCCGCTCATCCCGTAGTGCCTGGGGCTGCAGGGGCATCCTCCAGCCATGGGGACACGTGGTGCAGGTGTGCATGAGGGTGCTGAGGGCCCATCCGGTCTCTGGATGCAGGCACTAAGCTGCAGGAGAGGTTCGGTGTGTTTCCTGCCCTGGCAGAGGGTTGCCCTGGGGCTGCAGCACCCAGCCCAGCGAGCGAAGCCACCGACCCAGTGCAGCATAGGAGCGGGGTGCTGCAGCAGGTCCCCCTGCACAGAGGAGCTCTCCTGCAGGTCCCCGTGCCATGCAGGGCCGTGGTGCCGCTTCCTGAAGGCTGGCAGTGCCTGAGAGTGGTTTTGAAACGCTGCAAAGGCTCAGCCCAGCCAGATGAACATGTGCACAAAGCCCGTCCCCTGCTACGGGGCATATGTTGGAGAGGATCTTGCAGCAGAGCAGTGCGTGGATCTGCAGAGCCAGCTCCTGGCTCTGTCCCAGGCATCCGAGTCAATAATAAAATCCTTCACGCTTCTGTTCCTCTGACCGTCCCTCCCTCGCAAAGCAGAGAGCATTTCCCCTTTCCTTGTGTGTATGCAGGAGTGGATCCGTGTGGATCCGTGCCCTCCAGAGAGTGCCTGCCCCAGCTGGTGGGGATGCAATAGGATGGTTTGGACTCGTTTTTTTCCAAAGCTATGCCATGCACCTGCTGCTCTGAGCAACTACATTTCTGCAAGGAAAAAGGAGGAGAATTAAAGGCGAGGCCCATGAGAGCAGGTCTGGAGAGCATACAGCAGAGCAATGAGAGCTGCACGCGTTGAGTGAAGATCTTCATCCAGTGCTGGTCCGGGGCAGCAGCAGAGCAGCCTAGCAAAGGGAAACATTGGAAGAAAGCTCAGCTCATATTCAAGGCTTGAAATGCTAGCCCAGAGGCCAGCATTATCAGAATGGAGTTATTTAAACAAACCCAAACTTTTTTATTAAATCAAGTATGGTTCATCTCTGCTGGGATTCAAAGATGGGTACAAAGATGCTCCCTGTGGATTGCACCAGCCTGCATCTCCCACAGCACCTGATGGAGTAGGGGTGAGCCCAGCAATGGCCACCAGCAGCCAGCAACCAGCCTCACCATAGGGCACTGCAGCACGGAGGAGCTGGGAGAGTGGAACACGCAGGACAGTGTGCAGGATTCATCCAACGGTGGTAATTGGAAAGTCAAATAAAGAATGGCTGGGCATTAATCCTCGTGATTTAAACAAAACTGTAAAACATGAGCTTTCTCCAGTGAAAAATGATGAAGCGGCAGCAGCTAAGCCTCAAGAAGCACAGCTACTCTCGATATTAGGTGCAAGACATGCTTCCTGGCAAGCACAGCTCCATGGGTTAAGCCCTGGGCTGGGGACTCCTTCCCAGCACCCAGCAGGAGCTCAGGCATTGCGGGCAATGGGCACAGAGGTGGGGGCACGCAGGGGTCAGTCCTGGGAGGGGAGGGGGCACAGTGAGACACAGCAACCTGCTGGGACAGACCCGTCTCCCAGACATGGCATGAGCAAAGCCAGCTCACCTGCTGCTCCAGGTAAGGTGTCGAGTCTTTGGAAGCCTTCTTCACAGCACAAGGAAGACCCGGCTGGATGAACTGGATCCTGACCGAGCCGAGATTTATGGACCTCCTTAAACTTTACACCAGGAATACACCGCTGAGACCAGGGAGATTATGCACAATGCGTGAAGCTGAGCTCTTGCATAAATCTTGGCTGGCCGTGTGCCCTCTGCCATAAATTTCCCAGGGCACAGACCATCCCTCTCTGTGCACACAGCCTGTGCGCAGTGCCCATGGCTGCATCCGAGCCCACCTGGCACTGCAGCCCTGCTTGGGCTCCGTGTGCAGCATCACGCAGCAATTCAAGCCTTCCTGGTGGCAGAGACAAAGCGGTGGCCGCTCTCCAGGAACAGCCATACCTGCCAGCTCCTCAAGGGCACCTGTGCCCCCCGGGCCTGCACAGAACGGACACTGTGGCACGCCATTAACCCCAGCCTCAAGGAAGTGGCTGCAGGTGGTGCTCATGGCCCCAACCGCCCTGGAAAGAGCATGGCTATGACTGGAGAAAGGCCCCTTGCTGCCCGCGTCATGCCAAGGCTCCCTCACTCACTGCCATTTGTTATCACAGCTGAGCCCCCAGAATATCCTTGTCAGAAACACGTCCGTTTCCAGCCCCAGCCAGGATCTGATAAGGCGTGCAGCATCTGGTCCCCATTAGAGGCTGCTCGCTCTTGTTTCTGGCCGTGCAGGAGAAGCCTGGGGAGCCGTGCCGTGGTGCTGCGACCAGTCCCATCTGGTGAAAATTAGGGAAGCGATAACATCGGGGGGCTGCGGGGATGGGTGGGGGGAGATGTTTTTGTTTTGCTTTGGAATCACGTTCAACTCTTACACCGATGGAGGCCGAGATAACCTCCTCCAGCTTGTAGTCAGGCCCAGCTCTGGGCCAGCAGAGGGAGGGTTCTCTCCTGACAAAGCATTGTGTTCTTCCTTCCACATCCCTGGTTCCATCATGCAGATCATTGGCTCCATCATCCAGTATGGGTATATCCAGTGTGATGATGATCTGCTTCAGATCCATCTCAGGGTTGGAAACCAGGTTTCCACTCAGATCAGGTTTGGCTTGTCTCCTGGGGAGACTGTGATGGAAGGCCATTAGAACAGCATTCTCCAGCAAGGGCTTGCAGGAGATGGGATGGGCGTTAGGGCTTATGAGCTGGAGCAGCACTGAGAAGCCCAGAATCCCAGCATGGTTGGGTTAGAAAAGCCCTCACAGCCCCCAGCCCCACCCCTGCCATGGGCTGGCTGCCCCCACCAGCTCAGCTGCCCAGGGCCCATCCATGGCACCTCCAGCGATGGGCACCCACAGCTCTGGGCAGCAGTGCCACGTCCTCACTGTCCTCCAAGTAATGGATTTCCTCTCAGTGTCTGACCTAACTCTTCTCTTTTAGTTTAAGACCATTCCCCCTTGACCTATCACTACCAGAAGACCCACTTCAGGCCATCTCAGAACAAAACAAGGCTCATGTTGGTGTACCAACTCCACGTTGACTCAGCTCTATGGAGAGGAGGCTCAGAGGACATCCCCCATGGGCTCTCCCTGCTGTCCCCTAGAACTGGCAGCGGGTGGTCGTCCAGAAGTACCATAGATGAGCGGTGGGCTTCTACCATGCGTTGCCTCCCATTTAACCAAAGACTTTCCTCCCTTTCCTGTCCAG
Seq C2 exon
CCTGTGACTGCCACCCAGTTGGTGCTGCTGGCAAGACCTGCAACCAAACAACAGGGCAGTGCCCGTGCAAGGACGGCGTGACCGGCCTCACCTGCAACCGCTGCGCCAAGGGCTTCCAGCAGAGCCGCTCGCCTGTGGCCCCCTGCATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000029072:ENSGALT00000045108:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=WD(100=95.3)
A:
NA
C2:
PF0005319=Laminin_EGF=WD(100=94.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]