RnoINT0103699 @ rn6
Intron Retention
Gene
ENSRNOG00000006970 | Ntn3
Description
netrin 3 [Source:RGD Symbol;Acc:619811]
Coordinates
chr10:13578850-13579280:-
Coord C1 exon
chr10:13579092-13579280
Coord A exon
chr10:13579000-13579091
Coord C2 exon
chr10:13578850-13578999
Length
92 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
CTCGTTTTTTTTGTCCTCAGCTT
3' ss Score
9.03
Exon sequences
Seq C1 exon
CTTGCTCCTGCAATGGCCACGCCCGAAGATGCCGCTTCAACATGGAGCTGTACCGACTGTCCGGCCGCCGCAGTGGTGGGGTGTGCCTCAATTGCCGGCACAATACTGCTGGTCGTCACTGCCACTACTGTCGGGAGGGCTTCTATCGTGACCCAGGCCGTGTCCTGAGTGACCGTCGTGCTTGCAGAG
Seq A exon
GTGAGCCTGTCACCTGCATGCGTTCATGATTTACTTCCCCCAGGACCCCCGCTGCTCTTCTGAGTGAGCCTCCTCGTTTTTTTTGTCCTCAG
Seq C2 exon
CTTGTGACTGCCACCCAGTTGGTGCTGCTGGCAAAACCTGTAACCAGACCACAGGCCAGTGTCCCTGTAAGGATGGTGTTACCGGCCTCACCTGTAACCGCTGCGCCCCAGGTTTCCAGCAGAGCCGTTCTCCTGTCGCACCTTGTGTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006970:ENSRNOT00000009735:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.039
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=WD(100=95.3)
A:
NA
C2:
PF0005319=Laminin_EGF=WD(100=94.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACAATACTGCTGGTCGTCA
R:
AGGCCGGTAACACCATCCTTA
Band lengths:
180-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]