RnoINT0103715 @ rn6
Intron Retention
Gene
ENSRNOG00000021016 | Ntn5
Description
netrin 5 [Source:RGD Symbol;Acc:1565197]
Coordinates
chr1:101670755-101674709:+
Coord C1 exon
chr1:101670755-101671399
Coord A exon
chr1:101671400-101674559
Coord C2 exon
chr1:101674560-101674709
Length
3160 bp
Sequences
Splice sites
5' ss Seq
TGCGTAAGT
5' ss Score
9.73
3' ss Seq
TCATTCACTTTGTCATGAAGCCT
3' ss Score
2.96
Exon sequences
Seq C1 exon
GTACCGGCTCTGCTGTGACCGTGCTCGTTGCCCTCAGCCTCTTGCTCCTCCTTAGCCAGGCCACCTCAGACCCATGTTATGACCCAGGAGGGCGTCCTCGCTTTTGCCTCCCACCAGTGACCCAGTTGGTTGGCAAGGCAGCAGCCCCCTGCTCTCAGACCTGTGCTCTTCCTGCAGACAGCCCTGACCCTGTCTGCAATGGCACTCTGACCCTGGACCTGGACGGCTCCTTCCTCTTGACGTCTGTCACCCTGCGTTTCTGCACCGCAGGACCTCCAGCCCTGGTTCTTTCTGCTGCCTGGGCCATTGGAGGCCCCTGGAGGCCACTATGGCGCAGGCCTGCCTGGCCTGGGGTTTTGGGGGGTCCCAAGAAGGTAACCTTTCACTCCCCACCAGGCCCCAAGACCAGGATAGTGGCCAGCTACCTCCGTGTGGAGCTCGGGGGGAAAGCAGGGCTGGTGACCACTGGAGTAAGAGGCCGCTGCCAGTGCCATGGCCACGCTGCCCGCTGTGCCGCTCGGGCCCAGCCCCCACGCTGCCGCTGCCGCCACCACACCACTGGCCCAGGGTGTGAGAGCTGTCGCCCATCCCATCGAGACTGGCCCTGGAGACCTGCCACACCCCAGCACCCTCACCCGTGCTTGC
Seq A exon
GTAAGTCATGGGTCTTGCCCCCAATCCTTGCCACCACTTGGACCCCTGGGAAACATGCCAACATGCATTGGCCCCTTGTTCCAAAGCATGCAGCATGCTCTCTTCCCTTCAGAAATGCTTTTACTTGCTTGCTGTCACACTGTGCTGTAGCCTGGTTCTCTTTGTTTGCCAGACACACAGACACACACAGAAACACACACACAGACACACACACACACACACACACACATGCAAACACACACACACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCCCTCTGTCAGGGACCTTGACCCACCAGTTTTAACCAGTGGGCACACCAATGAAGTCCTGGGCAGATCATATCCCAGCGTCTGGTATGGCACTGGGTTTGGGCAAGGGGATAGGCAGACATACTTCCTGACTCCCGGGAGACACGGCACAGGGGAGAGTAAATGAAGAAACATTCTGATGGACCACCTACTGTCTGGATGAGAAGACTGCAGCCATCATTCACTAACACAAAGCCACATTGCGTGACCTGCTATGACCATCTGCCCAGCTCCCAGTAGGTGCTGCCATACTAGGCGACCCCAAACACAATTATGAGCAGCTTCAGCAGATGGCCTGGCCCAGTTTCAGCTCCTCTGCTCACAGTTATGTGGTCTCAGGCAAGGGATCTGATCTCTCTGTGCCTGTTTTCTTATTCAATAAAGTGTGGACAGTGACACTGTCCCTAAGGCTACAGAGAAGCCAGTGAGCTGGAGCCCTGGGAGCAGAGCTCTGTCCCTCCACTGAGCACCCACTATGATGACACTGCCAGGTAGAAAGGACACAGAGCTGAGGTGATTCTTAGGGGTTTGTCTTCCTAGATGCAGCCACCCCCAGAACGCGCTCTGGCCTCTCTTCCTCCAGTCACACCATCCGCTCCATTCCCACCTCTGTCTATGACCTCAGAAGGAGGCCTGAATACCTTCAGGCCCGTGGACAATCGATCTACTGACAGACAGATGCAGACGGATACACATTCCTCAGCTTTCAGGGAAAGCAGTGTCCTGGTCTTCTGCCCCACCCCCAACCCTACCTCAGGGACCAGCAGGGGAGACTCACCTGTCCTGATGCTGGGCAGGCTTCACGCAGGGCTTGGACAGGGCGTGGGTGTTAGGGAGGCTGTATCCATGAGTATGACCACAGCTAAGAGAAATGTGGCCCTGGGGACCTGGATGAGAGGCAATGACACATTCCTGGGGCTTTACAGAGAGGTAGCTTGACTGTCCTCTGTCCGCCATGTTGCTTGAGAAGCTGACGTGAGGCAAAGCTACTCTGGGTCAGAAAGGAGCTAAAGTCTGCATCTGCACAGAGGCACTGGAGCAACCCTGCCACTTAGAACCACCCAAACCCCTGGGAGACAGCAGAGAGCCTCCCTGGACAGGGAGCAACAGGGGCCCAAGAAAGGACTCATATTCTCAAGAACACAGAGCCGCCTCTACCCTTACTGCATGACTCCTCTGCTCGGTTCGGCTCCAGGGAGCTACAGGCCAGGCTCTCAGCCTCTAAGTCAAGTCCTTTCAGAGAGTGACCGGGTCCTCTGCTCTAACCTCTCTCTGGAATTCCTGGTAGAAGTACAGGACCTCGGGCCTGGGGATGCTGGATGAGCCCTTGATTTATGTGGATGGGTTCTGTTGTTTTAGCTTTCTTTCTTTCTTCCTTTCTTTCTTTCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTTCTTTTCTGACAATGTCTCACTATGCAGTCTTCACTGCCTGGAACTTGCTATGTAGACCAGGCTAGCCTACATAGCATAGAGTTGCCGCCTGAGTGCTGGGATTAAAAGTGTGCCCACCATGCCCAGCAGTTTATGTGGTTTTCAAGAACTCGCCAGGCATGGTAGGCTCTCCTATCTGTCAGCACTCAGGAAACAGAAGCAAGAAGACCGAAAGGTCTAGCTCAGTCGGGGCTTCCCGAGGAAGGAGATCTTTCCTGACCTGGTTCTCCCCCGGATCAAACAAACAGATGTATGATGTTTCCTAGTGTTTCTGATAAGCAGTGTGTGGGAGGCACAGAGGTCCTTGTGCTCATGGATGAGCACGAGGGGAGCCAGGAATGTTTAAAACACGGGGTTGTCTCTTGAGATGTCACGTGGTTCCCACTCAGAAGGTTGGGAATGGACATGTTTAATATCTTGGTGACCTTCGCACTATCCCTGTGGCTCAGACCACACCAGATCCTCCCCTACATCTTGGGCTTTTTTTTCTCTGTTCAATCTTTACGAAAGATGTCACGTACTTTAAAAGGAGTTTCAATGTCCTAAGCTGTTTTGCACACAGGATTAGGTTCATTGTCATTAGGAAATGTCACCAGACTGCGCTGTGCTTTATTAACTCTGCCTGAAATAAGCTAATTGGGGGTCAGACTCTCCATGTTTGAACCAGCACCAGCTACCGGGTCATCTTACCTCCTTGCCCTGCAGTCTAGGGCACAGAGCTATAGGACAGAGTAGTCCCCTTTGGGCAGAGGCAGGGACTGCCCCAACCCAGCCCATTCTTTCAGCACCGTGACCTCTCGGGAGGGTCACCCGCTAACTGGTGACCCTTGGGATACCACAGTTTATCGTGAGAATTAAGATATCCCAGGAATGAGCCACAGGCAGTCTCTAAAACCACAGAGCTCCATCCTTTCCTGAGGACAGGGTGGCAGGACGAAAGCTGGGGACGGGAGATGGACCTGGCCCTAACGTGCCTGTGTGACAGCTTCTGACCTCGTCTTGTTCCCAGCATGCTCCTGCAATCAGCATGCCAGGCGCTGCCGGTTCAACTCCGAGCTATTCAGGTTGTCAGGTGGCCGCAGCGGGGGTGTGTGCGAGCGGTGCCGCCACCACACAGCCGGGCGGCACTGTCACTACTGCCAGCCGGGGTTCTGGAGGGACCCAAGCCAGCCCATCACTAGTCCCAAGGCATGCAGGGGTGAGTGTGGCCTGAAGCCAAGCCAAAAGGGAAAGGGCAAAGCTGGCATTCTGAAACGGCAGGTACAGAGGTGGGAGCGAAGGAATTTAGAATGTCAGGTTTGGGGAAGGGGACATGGATTTTGTAAGGAGCCTATTGGCCCCAAGTAACTCATTCACTTTGTCATGAAG
Seq C2 exon
CCTGCCAGTGTCACCCAATTGGAGCAACAGGAGGGATGTGCAACCAGACCAGTGGCCAGTGCTCCTGCAAGTTAGGGGTCACGGGCCTGACATGCAATCACTGTGGTCCTGGGTACCAGCAGAGCCGCTCACCCAGGATGCCCTGTCAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021016:ENSRNOT00000028524:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.060 A=NA C2=0.039
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=WD(100=24.5)
A:
NA
C2:
PF0005319=Laminin_EGF=WD(100=96.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]