DmeEX0005333 @ dm6

Exon Skipping

Gene

Description

The gene Netrin-A is referred to in FlyBase by the symbol DmelNetA (CG18657, FBgn0015773). It is a protein_coding_gene from Dmel. It has 4 annotated transcripts and 4 polypeptides (2 unique). Gene sequence location is X:14604012..14653928. Its molecular function is unknown. It is involved in the biological process described with 9 unique terms, many of which group under: animal organ development; cell motility; sensory organ development; tissue development; regulation of cell development. 27 alleles are reported. The phenotypes of these alleles manifest in: axon; photoreceptor cell R8 stalk; cellular anatomical entity; commissure; cell projection. The phenotypic classes of alleles include: neuroanatomy defective; oxidative stress response defective; viable; size defective; cell migration defective. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of very low expression. Peak expression observed at stages throughout embryogenesis.

Coordinates

chrX:14610435-14620888:-

Coord C1 exon

chrX:14620700-14620888

Coord A exon

chrX:14610661-14610810

Coord C2 exon

chrX:14610435-14610591

Length

150 bp

Sequences

Splice sites

3' ss Seq

ATTTCGCCCTTCATTTTCAGCCT

3' ss Score

8.75

5' ss Seq

TAAGTGAGT

5' ss Score

6.43

Exon sequences

Seq C1 exon

AGTGCAACTGCAACAAGCACGCCCGTCAGTGCCGCTTCAATATGGAAATCTTTCGGCTTTCGCAGGGCGTCTCCGGCGGAGTCTGCCAGAATTGTCGCCACTCGACTACGGGCCGGAATTGTCACCAGTGCAAGGAGGGATTCTATCGGGACGCCACCAAACCACTCACCCATCGCAAGGTTTGCAAAG

Seq A exon

CCTGCGATTGCCATCCGATCGGGTCATCTGGCAAGATCTGCAACAGCACCAGCGGTCAATGTCCCTGCAAGGACGGGGTCACCGGACTGACCTGCAACCGCTGCGCTCGAGGTTACCAGCAAAGTCGCTCCCACATCGCCCCCTGCATAA

Seq C2 exon

AACAACCACCGCGTATGATCAACATGCTGGACACCCAGAATACCGCTCCCGAGCCGGATGAGCCCGAATCCTCTCCAGGATCTGGTGGCGACCGCAACGGCGCCGCCGGAATGGCCGCCCAGTCTCAGTACTATCGCACCGAGGGCGGCAGGGGTAA

VastDB Features

Vast-tools module Information

Secondary ID

FBgn0015773-'1-3,'1-2,5-3

Average complexity

S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features