BtaEX6108056 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000045625 | NTN3
Description
Bos taurus netrin 3 (NTN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001206905]
Coordinates
chr25:1978341-1978987:+
Coord C1 exon
chr25:1978341-1978529
Coord A exon
chr25:1978620-1978769
Coord C2 exon
chr25:1978937-1978987
Length
150 bp
Sequences
Splice sites
3' ss Seq
TGTCCCACTTCTGTCCTCAGCCT
3' ss Score
8.35
5' ss Seq
TTAGTGAGT
5' ss Score
5.79
Exon sequences
Seq C1 exon
CTTGCTCCTGCAATGGCCATGCCCGCCGCTGCCGCTTCAACATGGAGCTATACCGACTGTCTGGCCGCCGCAGCGGCGGTGTCTGCCTCAACTGCCGGCACAATACCGCCGGCCGGCATTGCCACTACTGCCGGGAGGGCTTCTACCGAGACCCCGGCCGTGCCCTGAGTGACCGCCGCGCCTGCAGGG
Seq A exon
CCTGTGACTGTCACCCTGTTGGTGCTGCTGGCAAAACCTGCAACCAGACCACCGGCCAGTGTCCCTGCAAGGATGGCGTCACTGGCCTCACCTGCAACCGCTGTGCCCCTGGCTTCCAGCAGAGCCGCTCTCCGGTGGCACCTTGCGTTA
Seq C2 exon
AGACCCCTGTCCCTGGACCCACTGAGGAGAGCAGTCCTGTGGCGCCCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000045625-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.039 C2=0.500
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=WD(100=95.3)
A:
PF0005319=Laminin_EGF=WD(100=94.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCTGCAATGGCCATGC
R:
ACAGGACTGCTCTCCTCAGTG
Band lengths:
226-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]