HsaEX6041887 @ hg19
Exon Skipping
Gene
ENSG00000162068 | NTN3
Description
netrin 3 [Source:HGNC Symbol;Acc:8030]
Coordinates
chr16:2522702-2523319:+
Coord C1 exon
chr16:2522702-2522890
Coord A exon
chr16:2522986-2523135
Coord C2 exon
chr16:2523269-2523319
Length
150 bp
Sequences
Splice sites
3' ss Seq
CTTCCCACCTCTGTCCTCAGCCT
3' ss Score
8.55
5' ss Seq
TTAGTGAGT
5' ss Score
5.79
Exon sequences
Seq C1 exon
CTTGCTCCTGCAACGGCCATGCCCGCCGCTGCCGCTTCAACATGGAGCTGTACCGACTGTCCGGCCGCCGCAGCGGGGGTGTCTGTCTCAACTGCCGGCACAACACCGCCGGCCGCCACTGCCACTACTGCCGGGAGGGCTTCTATCGAGACCCTGGCCGTGCCCTGAGTGACCGTCGGGCTTGCAGGG
Seq A exon
CCTGCGACTGTCACCCGGTTGGTGCTGCTGGCAAGACCTGCAACCAGACCACAGGCCAGTGTCCCTGCAAGGATGGCGTCACTGGCCTCACCTGCAACCGCTGCGCGCCTGGCTTCCAGCAAAGCCGCTCCCCAGTGGCGCCCTGTGTTA
Seq C2 exon
AGACCCCTATCCCTGGACCCACTGAGGACAGCAGCCCTGTGCAGCCCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162068-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.039 C2=0.611
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=WD(100=95.3)
A:
PF0005319=Laminin_EGF=WD(100=94.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTGCAACGGCCATGC
R:
CTGCACAGGGCTGCTGTC
Band lengths:
229-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)