RnoEX6046360 @ rn6
Exon Skipping
Gene
ENSRNOG00000006970 | Ntn3
Description
netrin 3 [Source:RGD Symbol;Acc:619811]
Coordinates
chr10:13578675-13579280:-
Coord C1 exon
chr10:13579092-13579280
Coord A exon
chr10:13578850-13578999
Coord C2 exon
chr10:13578675-13578725
Length
150 bp
Sequences
Splice sites
3' ss Seq
CTCGTTTTTTTTGTCCTCAGCTT
3' ss Score
9.03
5' ss Seq
TTAGTGAGT
5' ss Score
5.79
Exon sequences
Seq C1 exon
CTTGCTCCTGCAATGGCCACGCCCGAAGATGCCGCTTCAACATGGAGCTGTACCGACTGTCCGGCCGCCGCAGTGGTGGGGTGTGCCTCAATTGCCGGCACAATACTGCTGGTCGTCACTGCCACTACTGTCGGGAGGGCTTCTATCGTGACCCAGGCCGTGTCCTGAGTGACCGTCGTGCTTGCAGAG
Seq A exon
CTTGTGACTGCCACCCAGTTGGTGCTGCTGGCAAAACCTGTAACCAGACCACAGGCCAGTGTCCCTGTAAGGATGGTGTTACCGGCCTCACCTGTAACCGCTGCGCCCCAGGTTTCCAGCAGAGCCGTTCTCCTGTCGCACCTTGTGTTA
Seq C2 exon
AGACTCCTGTCCCTGGACCCACTGAAGAAAGCAGTCCTGTGGAGCCACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006970-'5-3,'5-1,6-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.039 C2=0.667
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=WD(100=95.3)
A:
PF0005319=Laminin_EGF=WD(100=94.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCTGCAATGGCCACG
R:
GTGGCTCCACAGGACTGCTTT
Band lengths:
234-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]