GgaEX1040600 @ galGal4
Exon Skipping
Gene
ENSGALG00000029072 | NTN3
Description
netrin-3 precursor [Source:RefSeq peptide;Acc:NP_001264534]
Coordinates
chr14:14021838-14027964:-
Coord C1 exon
chr14:14027776-14027964
Coord A exon
chr14:14022233-14022382
Coord C2 exon
chr14:14021838-14021891
Length
150 bp
Sequences
Splice sites
3' ss Seq
TTCCTCCCTTTCCTGTCCAGCCT
3' ss Score
8.76
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
Exon sequences
Seq C1 exon
CCTGCAACTGCAACCTGCACGCTCGGCGCTGCCGCTTCAACATGGAGCTGTATAAGCTGTCCGGCAGGAAGAGCGGCGGCGTTTGCCTCAACTGCCGACACAACACGGCTGGGAGGCACTGCCACTACTGCAAGGAGGGCTTCTACCGGGACCTCAGCAAGTCCATCACGGACCGCAAGGCCTGCAAAG
Seq A exon
CCTGTGACTGCCACCCAGTTGGTGCTGCTGGCAAGACCTGCAACCAAACAACAGGGCAGTGCCCGTGCAAGGACGGCGTGACCGGCCTCACCTGCAACCGCTGCGCCAAGGGCTTCCAGCAGAGCCGCTCGCCTGTGGCCCCCTGCATCA
Seq C2 exon
AGATCCCTGCCATCAACCCGACCTCTCTTGTCACCAGCACGGAGGCACCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000029072-'5-6,'5-5,7-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=WD(100=95.3)
A:
PF0005319=Laminin_EGF=WD(100=94.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCCGCTTCAACATGGAG
R:
GTGCCTCCGTGCTGGTGA
Band lengths:
210-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]