DreEX6096444 @ danRer10
Exon Skipping
Gene
ENSDARG00000076748 | ntn2
Description
netrin 2 [Source:ZFIN;Acc:ZDB-GENE-050310-2]
Coordinates
chr24:38843980-38850397:-
Coord C1 exon
chr24:38850209-38850397
Coord A exon
chr24:38845550-38845699
Coord C2 exon
chr24:38843980-38844033
Length
150 bp
Sequences
Splice sites
3' ss Seq
CTCTCTCTCTCTCTCTTCAGCAT
3' ss Score
12.52
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
Exon sequences
Seq C1 exon
CGTGTAACTGTAACCTTCATGCGCGGCGCTGTCGCTTTAACATGGAGTTGTACAAGCTGTCAGGCCGAAAGAGTGGAGGAGTGTGTATGAACTGCAGACACAACACTGCTGGACGCCACTGCCATTACTGCAAAGAGGGATTCTATAGGGACATGGGCAAAGCCATCACACACCGACGGGCATGCAAAG
Seq A exon
CATGTGACTGCCATCCGGTGGGAGCTGCAGGTAAGACGTGTAACCAGACGACGGGTCAGTGCCCGTGTAAAGACGGAGTGACCGGCATCACCTGTAACCGCTGTGCTAAAGGCTATCAGCAGAGTCGATCGCCCGTCGCCCCGTGCATCA
Seq C2 exon
AAATCCCGGTTATCAAGCCAACGGCTGTGATCAGCACTACAGAGGAGCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076748-'7-9,'7-8,8-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=WD(100=95.3)
A:
PF0005319=Laminin_EGF=WD(100=94.1)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTAACTGTAACCTTCATGCGC
R:
CTGCAGGCTCCTCTGTAGTGC
Band lengths:
242-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]