GgaEX1040597 @ galGal4
Exon Skipping
Gene
ENSGALG00000023626 | NTN1
Description
Netrin-1 [Source:UniProtKB/Swiss-Prot;Acc:Q90922]
Coordinates
chr18:2055035-2061962:+
Coord C1 exon
chr18:2055035-2055223
Coord A exon
chr18:2061172-2061321
Coord C2 exon
chr18:2061909-2061962
Length
150 bp
Sequences
Splice sites
3' ss Seq
CCATTGTGTTCCCCCTGCAGAGT
3' ss Score
11.25
5' ss Seq
TAAGTAGGT
5' ss Score
4.16
Exon sequences
Seq C1 exon
CCTGCAACTGCAACCTGCATGCACGGCGCTGCCGCTTCAACATGGAGCTGTACAAGCTGTCGGGCAGAAAGAGCGGCGGTGTCTGCCTCAACTGCCGGCACAACACGGCCGGGCGGCACTGCCACTACTGCAAGGAGGGCTTCTACCGCGACCTCAGCAAACCCATCTCCCACCGCAAGGCCTGCAAAG
Seq A exon
AGTGCGATTGCCATCCCGTGGGCGCCGCCGGCCAAACCTGCAACCAAACCACGGGGCAGTGTCCATGCAAGGACGGCGTCACCGGCATCACCTGCAACCGCTGTGCCAAGGGCTACCAGCAGAGCCGCTCGCCCATCGCGCCCTGCATAA
Seq C2 exon
AGATCCCCGCTGCGCCGCCCCCCACAGCTGCCAGCAGCACGGAGGAGCCCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023626-'3-3,'3-2,5-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=WD(100=95.3)
A:
PF0005319=Laminin_EGF=WD(100=94.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]