DreEX0051895 @ danRer10
Exon Skipping
Gene
ENSDARG00000105112 | ntn1a
Description
netrin 1a [Source:ZFIN;Acc:ZDB-GENE-990415-169]
Coordinates
chr6:23355118-23375036:-
Coord C1 exon
chr6:23374848-23375036
Coord A exon
chr6:23357670-23357819
Coord C2 exon
chr6:23355118-23355171
Length
150 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTCTGTTCCTCGCAGCCT
3' ss Score
10.54
5' ss Seq
TAAGTATGT
5' ss Score
4.58
Exon sequences
Seq C1 exon
CCTGCAATTGTAACCTTCATGCGAGGCGCTGTCGTTTCAACATGGAGCTTTACAAACTCTCTGGAAGGAAAAGTGGAGGAGTCTGTCTGAACTGCCGCCACAATACAGCTGGTCGCCACTGCCACTACTGCAAAGAGGGCTACTATAGAGACATGTCCAAGCCCATCTCCCACAGAAAGGCCTGCAAAG
Seq A exon
CCTGTGATTGCCATCCTGTGGGGGCCGCGGGCAAAACCTGTAACCAAACCACAGGCCAATGCCCCTGTAAAGACGGTGTGACGGGTATCACATGCAACCGTTGTGCTAACGGCTACCAGCAGAGCCGATCACCCATTGCCCCCTGCATAA
Seq C2 exon
AAATTCCCATCGCTCCGCCAACCACCACTGCAAGCAGCACAGAAGAGCCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000105112_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=0.000 C2=0.140
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=WD(100=95.3)
A:
PF0005319=Laminin_EGF=WD(100=94.1)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCAATTGTAACCTTCATGCG
R:
CTGATGGCTCTTCTGTGCTGC
Band lengths:
243-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]