RnoEX0061331 @ rn6
Exon Skipping
Gene
ENSRNOG00000003947 | Ntn1
Description
netrin 1 [Source:RGD Symbol;Acc:619809]
Coordinates
chr10:54806572-54825602:-
Coord C1 exon
chr10:54825414-54825602
Coord A exon
chr10:54810334-54810483
Coord C2 exon
chr10:54806572-54806625
Length
150 bp
Sequences
Splice sites
3' ss Seq
CTGTTTTATGTTCCTCACAGCCT
3' ss Score
8.69
5' ss Seq
TTAGTATGT
5' ss Score
2.85
Exon sequences
Seq C1 exon
CCTGCAACTGCAACCTTCATGCTCGGCGCTGCAGATTCAACATGGAGCTTTACAAGCTATCAGGGCGCAAGAGCGGGGGTGTCTGTCTCAACTGCCGCCACAACACTGCCGGCCGCCACTGCCACTACTGCAAGGAGGGCTTCTACCGAGACATGGGCAAGCCTATCACCCACCGGAAGGCTTGCAAAG
Seq A exon
CCTGTGATTGCCACCCTGTGGGTGCTGCTGGTAAGACCTGCAATCAAACCACCGGCCAGTGTCCCTGCAAGGACGGCGTGACAGGCATCACCTGCAACCGCTGTGCCAAAGGCTACCAGCAGAGCCGCTCCCCCATCGCCCCTTGCATTA
Seq C2 exon
AGATTCCTGTAGCGCCACCCACCACTGCAGCCAGCAGCATGGAAGAACCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003947_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=50=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=WD(100=95.3)
A:
PF0005319=Laminin_EGF=WD(100=94.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCAACTGCAACCTTCATGCTC
R:
TCAGGTTCTTCCATGCTGCTG
Band lengths:
238-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]