MmuEX6086362 @ mm10
Exon Skipping
Gene
ENSMUSG00000020902 | Ntn1
Description
netrin 1 [Source:MGI Symbol;Acc:MGI:105088]
Coordinates
chr11:68257455-68277611:-
Coord C1 exon
chr11:68277423-68277611
Coord A exon
chr11:68260497-68260646
Coord C2 exon
chr11:68257455-68257508
Length
150 bp
Sequences
Splice sites
3' ss Seq
TCTGTTTTATGTTCACACAGCCT
3' ss Score
7.17
5' ss Seq
TCAGTATGT
5' ss Score
5
Exon sequences
Seq C1 exon
CCTGCAACTGCAACCTCCATGCTCGGCGCTGCAGATTCAACATGGAGCTCTATAAGCTATCAGGGCGCAAGAGCGGGGGAGTCTGTCTCAACTGCCGCCACAACACTGCGGGCCGCCACTGCCACTACTGCAAGGAGGGCTTCTACCGAGACATGGGCAAGCCTATCACCCACCGGAAGGCTTGCAAAG
Seq A exon
CCTGTGATTGCCACCCAGTGGGTGCTGCTGGCAAGACCTGCAATCAAACCACTGGCCAATGTCCCTGCAAGGACGGCGTGACGGGCATCACCTGCAACCGATGTGCCAAAGGCTACCAGCAGAGCCGCTCCCCCATCGCCCCTTGCATCA
Seq C2 exon
AGATTCCTGTGGCGCCACCCACCACTGCAGCCAGCAGCGTGGAGGAACCGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020902-'11-11,'11-10,14-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=WD(100=95.3)
A:
PF0005319=Laminin_EGF=WD(100=94.1)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AACTGCAACCTCCATGCTCG
R:
CTTCCGGTTCCTCCACGCT
Band lengths:
238-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types