BtaEX6087087 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012137 | NTN1
Description
netrin 1 [Source:HGNC Symbol;Acc:HGNC:8029]
Coordinates
chr19:29203917-29219781:+
Coord C1 exon
chr19:29203917-29204105
Coord A exon
chr19:29216482-29216631
Coord C2 exon
chr19:29219728-29219781
Length
150 bp
Sequences
Splice sites
3' ss Seq
CTGTTGTGTGTCCTCCACAGCCT
3' ss Score
10.49
5' ss Seq
TAAGTATGC
5' ss Score
2.72
Exon sequences
Seq C1 exon
CCTGTAACTGCAACCTGCATGCCCGGCGGTGCCGTTTCAACATGGAGCTTTACAAGCTGTCGGGGCGCAAGAGTGGGGGCGTCTGCCTTAACTGTCGCCACAACACGGCCGGCCGTCACTGCCACTACTGCAAGGAGGGCTACTACCGCGACCTGGGCAAGCCCATCACCCACCGCAAGGCCTGCAAAG
Seq A exon
CCTGCGATTGCCACCCCGTGGGCGCTGCTGGCAAGACCTGCAACCAGACCACAGGCCAGTGTCCCTGCAAGGACGGCGTGACCGGCATCACCTGCAACCGCTGCGCCAAGGGCTACCAGCAGAGCCGCTCGCCCATCGCCCCCTGCATAA
Seq C2 exon
AGATCCCTGTGGCACCGCCAACCACTGCAGCCAGCAGCGTGGAGGAGCCCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012137-'1-3,'1-2,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=WD(100=95.3)
A:
PF0005319=Laminin_EGF=WD(100=94.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGTGCCGTTTCAACATG
R:
CTTCGGGCTCCTCCACGC
Band lengths:
218-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]