DreEX0051897 @ danRer10
Exon Skipping
Gene
ENSDARG00000022531 | ntn1b
Description
netrin 1b [Source:ZFIN;Acc:ZDB-GENE-990415-168]
Coordinates
chr3:25608466-25644622:-
Coord C1 exon
chr3:25644434-25644622
Coord A exon
chr3:25625601-25625750
Coord C2 exon
chr3:25608466-25608519
Length
150 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTGCTTTTTTTTCAGCCT
3' ss Score
9.18
5' ss Seq
TCAGTAAGA
5' ss Score
5.52
Exon sequences
Seq C1 exon
CTTGTCACTGTAACCTACATGCCCGCCGCTGCCGCTTCAACATGGAGCTGTATAAGTTGTCAGGCCGCAGGAGTGGAGGAGTCTGCCTGAACTGCAGACACAACACCGCCGGACGCCACTGCCACTACTGTAAAGAGGGCTACTACAGAGACATGAGCAAGGCTATATCACACCGACGTGCATGCAAAG
Seq A exon
CCTGCGATTGTCATCCTGTTGGTGCAGCTGGTAAGACCTGTAACCAGACAACTGGACAGTGTCCATGTAAAGATGGTGTGACTGGCATCACCTGTAATCGCTGTGCTAAAGGATACCAGCAGAGCAGATCACCCATCGCCCCCTGTATCA
Seq C2 exon
AAATTCCAGTTGCTGCTCCCACATCATCATACAGCAGCCCAGACGGGCCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000022531-'2-5,'2-4,3-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=WD(100=95.3)
A:
PF0005319=Laminin_EGF=WD(100=94.1)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGTCACTGTAACCTACATGCCC
R:
CGTCTGGGCTGCTGTATGATG
Band lengths:
234-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]