BtaEX6083334 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000044132 | NTN5
Description
netrin 5 [Source:HGNC Symbol;Acc:HGNC:25208]
Coordinates
chr18:55748199-55749174:-
Coord C1 exon
chr18:55748986-55749174
Coord A exon
chr18:55748666-55748815
Coord C2 exon
chr18:55748199-55748252
Length
150 bp
Sequences
Splice sites
3' ss Seq
CAGCTCCTCTCCTCACGCAGCCT
3' ss Score
5.96
5' ss Seq
AGCGTGAGT
5' ss Score
8.2
Exon sequences
Seq C1 exon
CCTGCTCCTGCAACCAGCACGCGCGACGCTGCAGGTTCAACTCTGAGCTGTTCAGGCTGTCGGGCGGCCGGAGCGGGGGCGTTTGTGAGCGGTGCCGCCACCACACAGCCGGCCGGCACTGCCACTACTGCCAGCCAGGGTTCTGGAGGGACCCCGGCCAGCCCATCAGCAGCCGCAAGGCCTGCAGGG
Seq A exon
CCTGCCAGTGCCATCCAATTGGGGCGACAGGCGGTGCCTGCAACCAGACCAATGGGCAGTGCTCCTGCAAGTTAGGGGTCACTGGCCTGACCTGCAACCGCTGTGGTCCCGGCTACCAGCAGAGCCGCTCCCCCAGGATGCCCTGCCAGC
Seq C2 exon
GAATCCTAGAGGCGACAACCACCCTTGCTACAACCCCTCATGCTTACAGCTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000044132-'3-5,'3-4,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.053
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=WD(100=95.3)
A:
PF0005319=Laminin_EGF=WD(100=96.1)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGGTTCAACTCTGAGCTG
R:
GCTGTAAGCATGAGGGGTTGT
Band lengths:
210-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]