RnoEX6002743 @ rn6
Exon Skipping
Gene
ENSRNOG00000021016 | Ntn5
Description
netrin 5 [Source:RGD Symbol;Acc:1565197]
Coordinates
chr1:101670755-101675083:+
Coord C1 exon
chr1:101670755-101671399
Coord A exon
chr1:101674560-101674709
Coord C2 exon
chr1:101675030-101675083
Length
150 bp
Sequences
Splice sites
3' ss Seq
TCATTCACTTTGTCATGAAGCCT
3' ss Score
2.96
5' ss Seq
AACGTGAGT
5' ss Score
9.54
Exon sequences
Seq C1 exon
CCCCTGCTCTCAGACCTGTGCTCTTCCTGCAGACAGCCCTGACCCTGTCTGCAATGGCACTCTGACCCTGGACCTGGACGGCTCCTTCCTCTTGACGTCTGTCACCCTGCGTTTCTGCACCGCAGGACCTCCAGCCCTGGTTCTTTCTGCTGCCTGGGCCATTGGAGGCCCCTGGAGGCCACTATGGCGCAGGCCTGCCTGGCCTGGGGTTTTGGGGGGTCCCAAGAAGGTAACCTTTCACTCCCCACCAGGCCCCAAGACCAGGATAGTGGCCAGCTACCTCCGTGTGGAGCTCGGGGGGAAAGCAGGGCTGGTGACCACTGGAGTAAGAGGCCGCTGCCAGTGCCATGGCCACGCTGCCCGCTGTGCCGCTCGGGCCCAGCCCCCACGCTGCCGCTGCCGCCACCACACCACTGGCCCAGGGTGTGAGAGCTGTCGCCCATCCCATCGAGACTGGCCCTGGAGACCTGCCACACCCCAGCACCCTCACCCGTGCTTGC
Seq A exon
CCTGCCAGTGTCACCCAATTGGAGCAACAGGAGGGATGTGCAACCAGACCAGTGGCCAGTGCTCCTGCAAGTTAGGGGTCACGGGCCTGACATGCAATCACTGTGGTCCTGGGTACCAGCAGAGCCGCTCACCCAGGATGCCCTGTCAAC
Seq C2 exon
GAATTCCAGAAGCAACAACTGCCCTTGCTACTACTCCTGTTGCATCGCGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021016-'2-4,'2-3,4-4=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.060 A=0.039 C2=0.158
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=WD(100=24.5)
A:
PF0005319=Laminin_EGF=WD(100=96.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGTGACCACTGGAGTAAG
R:
ATCGCGATGCAACAGGAGTAG
Band lengths:
242-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]