HsaEX6095982 @ hg38
Exon Skipping
Gene
ENSG00000142233 | NTN5
Description
netrin 5 [Source:HGNC Symbol;Acc:HGNC:25208]
Coordinates
chr19:48663761-48664767:-
Coord C1 exon
chr19:48664579-48664767
Coord A exon
chr19:48664143-48664292
Coord C2 exon
chr19:48663761-48663814
Length
150 bp
Sequences
Splice sites
3' ss Seq
CAGCTCCTCTGCTCATGTAGCCT
3' ss Score
4.31
5' ss Seq
AGCGTAAGT
5' ss Score
10.07
Exon sequences
Seq C1 exon
CCTGCTCCTGCAACCAGCACGCCCGACGCTGCCGGTTCAACTCTGAGCTGTTCAGACTGTCGGGCGGCCGGAGTGGGGGTGTTTGTGAGCGGTGCCGCCACCACACAGCTGGGCGGCACTGCCACTACTGCCAACCTGGGTTCTGGAGGGACCCTAGCCAGCCTATCTTCAGCCGCAGGGCCTGCAGAG
Seq A exon
CCTGCCAGTGCCACCCTATTGGGGCAACAGGAGGAACCTGCAACCAGACCAGTGGGCAGTGCACCTGCAAGTTAGGGGTCACAGGCCTGACCTGCAACCGCTGTGGCCCTGGCTACCAGCAGAGCCGCTCCCCCAGGATGCCCTGCCAGC
Seq C2 exon
GAATTCCAGAGGCAACAACCACCCTTGCCACTACTCCTGGTGCTTATAGCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000142233-'7-9,'7-7,8-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.082 C2=0.250
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=WD(100=95.3)
A:
PF0005319=Laminin_EGF=WD(100=96.1)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GACGCTGCCGGTTCAACTC
R:
TAAGCACCAGGAGTAGTGGCA
Band lengths:
211-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains