MmuEX0032526 @ mm10
Exon Skipping
Gene
ENSMUSG00000070564 | Ntn5
Description
netrin 5 [Source:MGI Symbol;Acc:MGI:2685330]
Coordinates
chr7:45686577-45691937:+
Coord C1 exon
chr7:45686577-45686825
Coord A exon
chr7:45691412-45691561
Coord C2 exon
chr7:45691884-45691937
Length
150 bp
Sequences
Splice sites
3' ss Seq
TCTTGTGTTTTGTCACGAAGCCT
3' ss Score
3.81
5' ss Seq
AACGTGAGT
5' ss Score
9.54
Exon sequences
Seq C1 exon
GCCCCAAGACCAGGATAGTGGCCAGCTACCTCCGTGTGGAGTTCGGGGGAAAAGCAGGGCTGGTGACCACTGGAGTAAGAGGCCGCTGCCAGTGCCACGGCCACGCTGCCCGCTGTGCCACTCGGGCCCAGCCCCCACGCTGCCGCTGCCGCCACCACACCACTGGCCCAGGGTGTGAGAGCTGTCGCCCATCCCATCGAGACTGGCCCTGGCGACCTGCCACACCCCAGCACCCTCACCCGTGCTTGC
Seq A exon
CCTGCCAGTGCCACCCAATTGGAGCAACGGGAGGGATGTGCAACCAGACCAGTGGCCAGTGCTCCTGCAAGTTAGGGGTCACAGGCCTGACATGCAATCGCTGTGGTCCTGGCTACCAGCAGAGCCGCTCACCCAGGATGCCCTGCCAAC
Seq C2 exon
GAATTCCAGAGGCAACAACTACCCCTGCTACTACCCCTGTTGCATCTCGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070564-'6-9,'6-5,11-9=AN
Average complexity
A_C2
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.051 A=0.111 C2=0.702
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=WD(100=63.1)
A:
PF0005319=Laminin_EGF=WD(100=96.1)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGGAGTTCGGGGGAAAAG
R:
GTAGCAGGGGTAGTTGTTGCC
Band lengths:
247-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types