MmuEX0032524 @ mm10
Exon Skipping
Gene
ENSMUSG00000070564 | Ntn5
Description
netrin 5 [Source:MGI Symbol;Acc:MGI:2685330]
Coordinates
chr7:45684022-45691561:+
Coord C1 exon
chr7:45684022-45684498
Coord A exon
chr7:45686181-45686825
Coord C2 exon
chr7:45691412-45691561
Length
645 bp
Sequences
Splice sites
3' ss Seq
TCTGCCACCTCTGTCTACAGGTG
3' ss Score
11
5' ss Seq
TGCGTAAGT
5' ss Score
9.73
Exon sequences
Seq C1 exon
ACGCACTTGGGGCAGGAGGATGCAGGATGGGGAGGGGCTGGCTGGCTTGGGGTCGGCCAAAAGCAGGGGCTGGCAAGCTAAACTCCAGAGGTGCTGGGGCAAGTGGGAACAGGCCAGGACCCCAATCCCAGAACCCCAAGCTGTAGTCATACCCCTACCTGCTTGGATCCTTCTAGGCCGGCTTGTTTGGGGCCACCAAGCTTCAAGCCTGCTGGGGGCGACAGTGCTCCTGTCCCACGCAGTCTCGGGTGGCATGGCTGGCAAGGGTCCCTGTGGGAAAGCGTGGCTGCTGTTGGCTAGGGTTTGGGTGGGCGGTAGTGTTGGATTCTGCGGGCTCTGCTTTCAGCTCCCGCCCAGAACCCCCACTAGCCTGGGCCTGAGAACAGCCACTCTCACTCCTCCCGAGAGCCCTCCAAGTGCTTCTCCTACAGAAGAGTGTGGGGATGACCGACTACAGGACACTCTTTTCTTCTCCAG
Seq A exon
GTGCCGGCTCTACTGTGACCACGCCCATTACCCTCAGCCTCTTGCTCCTCCTTAGCCAGGCCACCTCAGACCCATGCTATGATCCAGGAGGGCGCCCTCGCTTTTGCCTCCCACCAGTGACCCAGTTGGTTGGCAAGGCAGCAGCCCCCTGCTCTCAGACCTGTGCTCTTCCTGCAGCCAGCCCTGGCCCTGCCTGCAACAGTAGTCTGACCCTGGACCTGGACGGCTCCTTCCTCTTGACATCTGTGACCCTGCGTTTCTGCACAGCGGGACCTCCAGCCCTGGTTCTTTCTGCTGCCTGGGCCACTGGGGGGCCCTGGAGGCCACTATGGCGTAGGCCTGCCTGGCCTGGGGCTCTGGGGGGCCCCAAGAAGGTAACCTTTCACTCCCCCCCAGGCCCCAAGACCAGGATAGTGGCCAGCTACCTCCGTGTGGAGTTCGGGGGAAAAGCAGGGCTGGTGACCACTGGAGTAAGAGGCCGCTGCCAGTGCCACGGCCACGCTGCCCGCTGTGCCACTCGGGCCCAGCCCCCACGCTGCCGCTGCCGCCACCACACCACTGGCCCAGGGTGTGAGAGCTGTCGCCCATCCCATCGAGACTGGCCCTGGCGACCTGCCACACCCCAGCACCCTCACCCGTGCTTGC
Seq C2 exon
CCTGCCAGTGCCACCCAATTGGAGCAACGGGAGGGATGTGCAACCAGACCAGTGGCCAGTGCTCCTGCAAGTTAGGGGTCACAGGCCTGACATGCAATCGCTGTGGTCCTGGCTACCAGCAGAGCCGCTCACCCAGGATGCCCTGCCAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070564-'1-5,'1-0,7-5=AN
Average complexity
A_C3
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=0.070 C2=0.111
Domain overlap (PFAM):
C1:
NO
A:
PF0005319=Laminin_EGF=WD(100=24.5)
C2:
PF0005319=Laminin_EGF=WD(100=96.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTTCTAGGCCGGCTTGTT
R:
ATCCCTCCCGTTGCTCCAATT
Band lengths:
348-993
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types