RnoEX6002744 @ rn6
Exon Skipping
Gene
ENSRNOG00000021016 | Ntn5
Description
netrin 5 [Source:RGD Symbol;Acc:1565197]
Coordinates
chr1:101669086-101674709:+
Coord C1 exon
chr1:101669086-101669170
Coord A exon
chr1:101670755-101671399
Coord C2 exon
chr1:101674560-101674709
Length
645 bp
Sequences
Splice sites
3' ss Seq
TCTGCCACCTCTGTCTACAGGTA
3' ss Score
10.78
5' ss Seq
TGCGTAAGT
5' ss Score
9.73
Exon sequences
Seq C1 exon
TCATTCCTCCTGATTGCCTACCAAGTGCTGCGGCTACAGAAGAGGGTGGGGATGGCAGACTACAGGACACTCTTCTCGCCTTCAG
Seq A exon
GTACCGGCTCTGCTGTGACCGTGCTCGTTGCCCTCAGCCTCTTGCTCCTCCTTAGCCAGGCCACCTCAGACCCATGTTATGACCCAGGAGGGCGTCCTCGCTTTTGCCTCCCACCAGTGACCCAGTTGGTTGGCAAGGCAGCAGCCCCCTGCTCTCAGACCTGTGCTCTTCCTGCAGACAGCCCTGACCCTGTCTGCAATGGCACTCTGACCCTGGACCTGGACGGCTCCTTCCTCTTGACGTCTGTCACCCTGCGTTTCTGCACCGCAGGACCTCCAGCCCTGGTTCTTTCTGCTGCCTGGGCCATTGGAGGCCCCTGGAGGCCACTATGGCGCAGGCCTGCCTGGCCTGGGGTTTTGGGGGGTCCCAAGAAGGTAACCTTTCACTCCCCACCAGGCCCCAAGACCAGGATAGTGGCCAGCTACCTCCGTGTGGAGCTCGGGGGGAAAGCAGGGCTGGTGACCACTGGAGTAAGAGGCCGCTGCCAGTGCCATGGCCACGCTGCCCGCTGTGCCGCTCGGGCCCAGCCCCCACGCTGCCGCTGCCGCCACCACACCACTGGCCCAGGGTGTGAGAGCTGTCGCCCATCCCATCGAGACTGGCCCTGGAGACCTGCCACACCCCAGCACCCTCACCCGTGCTTGC
Seq C2 exon
CCTGCCAGTGTCACCCAATTGGAGCAACAGGAGGGATGTGCAACCAGACCAGTGGCCAGTGCTCCTGCAAGTTAGGGGTCACGGGCCTGACATGCAATCACTGTGGTCCTGGGTACCAGCAGAGCCGCTCACCCAGGATGCCCTGTCAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021016-'0-3,'0-0,2-3=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.060 C2=0.039
Domain overlap (PFAM):
C1:
NO
A:
PF0005319=Laminin_EGF=WD(100=24.5)
C2:
PF0005319=Laminin_EGF=WD(100=96.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGATTGCCTACCAAGTGC
R:
AGGGCATCCTGGGTGAGC
Band lengths:
222-867
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]