HsaEX6095981 @ hg19
Exon Skipping
Gene
ENSG00000142233 | NTN5
Description
netrin 5 [Source:HGNC Symbol;Acc:25208]
Coordinates
chr19:49167836-49176264:-
Coord C1 exon
chr19:49176189-49176264
Coord A exon
chr19:49173613-49174263
Coord C2 exon
chr19:49167836-49168024
Length
651 bp
Sequences
Splice sites
3' ss Seq
GCCACCTCTCTTCCCTCCAGGTG
3' ss Score
12.5
5' ss Seq
TACGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
GAGAGCCCACCGCGCCACAGCTTGGAGGAAGAGCCTGCGGGGAACTGGCTGCAGGACGCTCTCTTCTTGAGTGCAG
Seq A exon
GTGCTGGCTCTGCTGTGACCATGCCCGTGACCTTTGCCCTCCTGCTCCTCCTGGGCCAGGCCACTGCGGACCCATGCTACGATCCACAGGGCCGCCCCCAATTCTGCCTCCCGCCAGTGACACAGCTGGCTGCCGTGGCGGCCTCCTGCCCTCAGGCCTGTGCCCTGTCCCCAGGAAACCACCTTGGCGCCAGGGAAACCTGCAATGGCAGCCTGACTTTGGCCCTGGGTGGCCCCTTCCTCCTGACATCTGTCAGCTTGCGCTTCTGTACCCCAGGACCCCCAGCCCTCATCCTGTCTGCTGCCTGGGCCTCAGGGGGTCCCTGGAGGCTGCTGTGGCACAGGCCCGCCTGGCCTGGGGCCTTAGGGGGCCCTGAAAGGGTGACCTTCCACTCCACACCAGGTCCTAAGGCCACTGTGGCGGCCAGCCACCTCCGTGTGGAGTTTGGGGGCCAGGCCGGGCTAGCGGCAGCTGGGCTGAGAGGCCGCTGCCAGTGTCATGGCCACGCTGCCCGCTGTGCCGCCCGTGCCCGGCCCCCCCGCTGCCACTGCCGCCACCATACCACTGGCCCGGGGTGCGAGAGCTGCCGCCCGTCCCATCGAGACTGGCCCTGGCGGCCTGCCACGCCCCGGCACCCCCACCCTTGCCTAC
Seq C2 exon
CCTGCTCCTGCAACCAGCACGCCCGACGCTGCCGGTTCAACTCTGAGCTGTTCAGACTGTCGGGCGGCCGGAGTGGGGGTGTTTGTGAGCGGTGCCGCCACCACACAGCTGGGCGGCACTGCCACTACTGCCAACCTGGGTTCTGGAGGGACCCTAGCCAGCCTATCTTCAGCCGCAGGGCCTGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000142233-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.090 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0005319=Laminin_EGF=WD(100=25.1)
C2:
PF0005319=Laminin_EGF=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGCTTGGAGGAAGAGCC
R:
CTGCGGCTGAAGATAGGCTG
Band lengths:
239-890
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)