HsaEX6095981 @ hg38
Exon Skipping
Gene
ENSG00000142233 | NTN5
Description
netrin 5 [Source:HGNC Symbol;Acc:HGNC:25208]
Coordinates
chr19:48664579-48673007:-
Coord C1 exon
chr19:48672932-48673007
Coord A exon
chr19:48670356-48671006
Coord C2 exon
chr19:48664579-48664767
Length
651 bp
Sequences
Splice sites
3' ss Seq
GCCACCTCTCTTCCCTCCAGGTG
3' ss Score
12.5
5' ss Seq
TACGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
GAGAGCCCACCGCGCCACAGCTTGGAGGAAGAGCCTGCGGGGAACTGGCTGCAGGACGCTCTCTTCTTGAGTGCAG
Seq A exon
GTGCTGGCTCTGCTGTGACCATGCCCGTGACCTTTGCCCTCCTGCTCCTCCTGGGCCAGGCCACTGCGGACCCATGCTACGATCCACAGGGCCGCCCCCAATTCTGCCTCCCGCCAGTGACACAGCTGGCTGCCGTGGCGGCCTCCTGCCCTCAGGCCTGTGCCCTGTCCCCAGGAAACCACCTTGGCGCCAGGGAAACCTGCAATGGCAGCCTGACTTTGGCCCTGGGTGGCCCCTTCCTCCTGACATCTGTCAGCTTGCGCTTCTGTACCCCAGGACCCCCAGCCCTCATCCTGTCTGCTGCCTGGGCCTCAGGGGGTCCCTGGAGGCTGCTGTGGCACAGGCCCGCCTGGCCTGGGGCCTTAGGGGGCCCTGAAAGGGTGACCTTCCACTCCACACCAGGTCCTAAGGCCACTGTGGCGGCCAGCCACCTCCGTGTGGAGTTTGGGGGCCAGGCCGGGCTAGCGGCAGCTGGGCTGAGAGGCCGCTGCCAGTGTCATGGCCACGCTGCCCGCTGTGCCGCCCGTGCCCGGCCCCCCCGCTGCCACTGCCGCCACCATACCACTGGCCCGGGGTGCGAGAGCTGCCGCCCGTCCCATCGAGACTGGCCCTGGCGGCCTGCCACGCCCCGGCACCCCCACCCTTGCCTAC
Seq C2 exon
CCTGCTCCTGCAACCAGCACGCCCGACGCTGCCGGTTCAACTCTGAGCTGTTCAGACTGTCGGGCGGCCGGAGTGGGGGTGTTTGTGAGCGGTGCCGCCACCACACAGCTGGGCGGCACTGCCACTACTGCCAACCTGGGTTCTGGAGGGACCCTAGCCAGCCTATCTTCAGCCGCAGGGCCTGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000142233_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.090 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0005319=Laminin_EGF=WD(100=25.1)
C2:
PF0005319=Laminin_EGF=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGCTTGGAGGAAGAGCC
R:
CTGCGGCTGAAGATAGGCTG
Band lengths:
239-890
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains