GgaEX7007854 @ galGal4
Exon Skipping
Gene
ENSGALG00000006802 | LAMB2
Description
laminin subunit beta-2 precursor [Source:RefSeq peptide;Acc:NP_989497]
Coordinates
chr12:11547363-11548077:+
Coord C1 exon
chr12:11547363-11547565
Coord A exon
chr12:11547646-11547766
Coord C2 exon
chr12:11547889-11548077
Length
121 bp
Sequences
Splice sites
3' ss Seq
TCACCGTGGCGTCCCGGCAGGTG
3' ss Score
10.1
5' ss Seq
GCCGTGAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
ATCTGCTGCGCGTCACCAACCTGAGGGTGAACCTCACCAAGCTGCACACGCTGGGGGATAACCTGCTGGACTCACGGCGGGAGATCCGCGAGAAGTACTACTATGCGCTGTATGAGATGGTGCTGCGCGGAAACTGCTTCTGCTACGGGCATGCCTCGGAGTGTGCACCACTCAGCGGGGCCACCGCCACTGCAGATGGCATG
Seq A exon
GTGCACGGGCGCTGTGTCTGCAAGCACCACACGCAGGGGCTGAACTGTGAGCGCTGCGAGGACTTCTACCACGAGCTGCCCTGGCGCCCGGCTGAGGGCTCCAGCACCAACGCCTGCCGCC
Seq C2 exon
GGTGCGACTGCAACGAGCACTCACGGCGCTGCCACTTCGACATGGCCGTGTTCCTGGCCACCGGGAATACCAGCGGGGCCGTGTGCGACGGCTGCCAGCACAACACCATGGGGCGCCGCTGCCACCTCTGCAAGCCCTTCTACTACAAGGATCCCAGCAAGGACCTTCGGGATCCAGCCGTGTGCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006802-'6-9,'6-8,7-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005512=Laminin_N=PD(32.6=63.2),PF0005319=Laminin_EGF=PU(35.5=32.4)
A:
PF0005319=Laminin_EGF=PD(61.3=92.7)
C2:
PF0005319=Laminin_EGF=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCGCTGTATGAGATGGTGC
R:
AGTAGAAGGGCTTGCAGAGGT
Band lengths:
245-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]