MmuEX6068902 @ mm10
Exon Skipping
Gene
ENSMUSG00000052911 | Lamb2
Description
laminin, beta 2 [Source:MGI Symbol;Acc:MGI:99916]
Coordinates
chr9:108481808-108482696:+
Coord C1 exon
chr9:108481808-108482010
Coord A exon
chr9:108482101-108482221
Coord C2 exon
chr9:108482508-108482696
Length
121 bp
Sequences
Splice sites
3' ss Seq
CTCCCCTCGTATCTGCACAGGTA
3' ss Score
8.83
5' ss Seq
GGAGTGAGT
5' ss Score
6.05
Exon sequences
Seq C1 exon
ACCTGTTGAAGATCACCAACCTACGAGTGAACTTAACCCGGCTTCACACACTGGGAGACAACTTGCTTGACCCACGGAGGGAGATCCGGGAAAAATACTATTATGCTCTCTATGAACTTGTCATCCGTGGCAACTGCTTCTGCTATGGCCACGCCTCACAGTGTGCGCCTGCACCAGGGGCGCCGGCCCATGCTGAGGGCATG
Seq A exon
GTACACGGAGCCTGTATCTGCAAGCACAATACTCGTGGACTCAACTGTGAGCAGTGTCAGGATTTCTATCAGGACCTTCCCTGGCACCCTGCAGAGGACGGCCATACTCACGCCTGTCGGA
Seq C2 exon
AGTGTGAGTGCAACGGGCATACTCATAGCTGCCACTTTGACATGGCTGTCTACCTGGCATCTGGAAATGTAAGTGGAGGCGTATGCGATGGGTGTCAGCACAACACAGCTGGGCGCCATTGTGAGTTCTGCCGGCCCTTCTTCTACCGTGACCCCACCAAGGACATGCGGGACCCAGCTGTGTGCCGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052911-'13-17,'13-16,19-17=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005512=Laminin_N=PD(18.3=63.2),PF0005319=Laminin_EGF=PU(35.5=32.4)
A:
PF0005319=Laminin_EGF=PD(61.3=92.7)
C2:
PF0005319=Laminin_EGF=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACAACTTGCTTGACCCACG
R:
TGTGTTGTGCTGACACCCATC
Band lengths:
255-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types