GgaEX1032871 @ galGal3
Exon Skipping
Gene
ENSGALG00000007905 | LAMB1
Description
NA
Coordinates
chr1:15891320-15893306:-
Coord C1 exon
chr1:15893104-15893306
Coord A exon
chr1:15891677-15891797
Coord C2 exon
chr1:15891320-15891508
Length
121 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTATTTTAATGACAGGTC
3' ss Score
8.37
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
ACCTGTTGAAGATCACAAATCTAAGAGTCAAGTTCACCAAGCTGCACACACTGGGAGATAACCTCCTGGATTCGAGGATGGAGATCAGGGAGAAGTACTACTATGCCATTTACGACATGGTGGTGCGCGGGAACTGCTTCTGCTATGGCCATGCCAGCGAGTGTGCACCAGTGGAGGGCTTCAGTGAAGAAGTGGAAGGAATG
Seq A exon
GTCCATGGGCACTGCATGTGCAGGCATAATACCAAGGGCTTGAACTGTGAGCAGTGTTTGGATTTCTACCATGACTTACCTTGGCGACCTGCCGAAGGCCGCAATAGTAACGCATGCAAAA
Seq C2 exon
AGTGTAATTGCAATGGTCACTCCACGCAGTGCCACTTCGACATGGCCGTGTACATGGCGACAGGGAACACCAGCGGAGGGGTGTGTGACGACTGCCAGCACAACACAGTGGGGCGCAACTGCGAGCAGTGCAAGCCCTTCTACTTCCAGCACCCAGAGAGAGACCTACGGGACCCTGACGTCTGCGAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007905-'11-10,'11-9,13-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005512=Laminin_N=PD(18.4=63.2),PF0005319=Laminin_EGF=PU(35.5=32.4)
A:
PF0005319=Laminin_EGF=PD(61.3=92.7)
C2:
PF0005319=Laminin_EGF=WD(100=95.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTTCACCAAGCTGCACACA
R:
GTTCCCTGTCGCCATGTACAC
Band lengths:
242-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]