BtaEX6027239 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011412 | LAMB1
Description
laminin subunit beta-1 precursor [Source:RefSeq peptide;Acc:NP_001193448]
Coordinates
chr4:49313421-49318369:-
Coord C1 exon
chr4:49318167-49318369
Coord A exon
chr4:49315408-49315528
Coord C2 exon
chr4:49313421-49313609
Length
121 bp
Sequences
Splice sites
3' ss Seq
CTGTTTTTGTAACTTTCAAGGTT
3' ss Score
8.62
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
ATCTCTTAAAAATTACCAACTTGAGGATCAAGTTTGTGAAACTACATACTTTGGGAGATAACCTTTTGGATTCCAGAATGGAAATCAGAGAGAAGTATTATTACGCGGTTTACGATATGGTGGTTCGAGGAAACTGCTTCTGCTATGGCCACGCCAGCGAGTGTGCCCCGGTGGACGGAGTCAATGAAGAAGTAGAAGGAATG
Seq A exon
GTTCACGGACACTGCATGTGCAGGCATAACACCAAGGGCTTAAACTGTGAACAGTGCATGGATTTCTACCATGATTTACCTTGGAGACCCGCTGAAGGTCGAAACAGCAATGCTTGTAAAA
Seq C2 exon
AGTGTAACTGCAACGAACATTCCAGCTCATGCCACTTCGACATGGCGGTCTACTTGGCCACTGGCAACGTCAGCGGAGGGGTGTGTGATGACTGTCAGCACAACACGATGGGGCGCAACTGTGAGCAGTGCAAACCGTTTTACTACCAGCACCCGGAGAGAGACATCCGAGATCCTAGTCTCTGTGAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011412-'7-10,'7-9,8-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005512=Laminin_N=PD(18.3=63.2),PF0005319=Laminin_EGF=PU(35.5=32.4)
A:
PF0005319=Laminin_EGF=PD(61.3=92.7)
C2:
PF0005319=Laminin_EGF=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGTGGTTCGAGGAAACTGC
R:
CTCTCCGGGTGCTGGTAGTAA
Band lengths:
247-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]