RnoEX0049249 @ rn6
Exon Skipping
Gene
ENSRNOG00000005678 | Lamb1
Description
laminin subunit beta 1 [Source:RGD Symbol;Acc:1306311]
Coordinates
chr6:50545956-50550822:+
Coord C1 exon
chr6:50545956-50546158
Coord A exon
chr6:50549087-50549207
Coord C2 exon
chr6:50550634-50550822
Length
121 bp
Sequences
Splice sites
3' ss Seq
CCTGGTTTGCAACTCCCCAGGTT
3' ss Score
6.15
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
ATCTATTAAAAATCACCAACTTGAGAATCAAGTTCGTGAAACTGCACACCTTGGGAGATAACCTTTTGGACTCCAGAATGGAAATCAGAGAGAAGTACTATTACGCTGTTTATGATATGGTGGTTCGAGGGAACTGCTTCTGCTATGGTCATGCCAGTGAATGTGCCCCCGTGGATGGATTCAACGAAGAAGTGGAAGGAATG
Seq A exon
GTTCATGGGCACTGCATGTGCAGACACAACACTAAAGGCTTGAACTGTGAGCTGTGCATGGATTTCTACCACGATTTGCCGTGGAGACCTGCCGAAGGTCGGAACAGTAACGCCTGCAAAA
Seq C2 exon
AGTGTAACTGCAACGAACATTCCAGCTCGTGTCACTTTGACATGGCGGTCTTCCTGGCTACCGGCAATGTCAGCGGGGGAGTGTGTGATAACTGTCAGCACAACACCATGGGGCGCAACTGCGAGCAGTGCAAACCCTTCTACTTCCAGCACCCTGAGAGGGACATCCGGGACCCCAATCTCTGCGAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005678-'20-9,'20-8,22-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005512=Laminin_N=PD(18.3=63.2),PF0005319=Laminin_EGF=PU(35.5=32.4)
A:
PF0005319=Laminin_EGF=PD(61.3=92.7)
C2:
PF0005319=Laminin_EGF=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCTGCTATGGTCATGCCA
R:
AGAGATTGGGGTCCCGGATG
Band lengths:
251-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]