BtaEX6095457 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000022635 | LAMC1
Description
Bos taurus laminin, beta 2 (laminin S) (LAMB2), mRNA. [Source:RefSeq mRNA;Acc:NM_001046247]
Coordinates
chr22:51458070-51459343:+
Coord C1 exon
chr22:51458070-51458272
Coord A exon
chr22:51458361-51458481
Coord C2 exon
chr22:51459155-51459343
Length
121 bp
Sequences
Splice sites
3' ss Seq
TCGCCTGCCCACCCTCCTAGGTT
3' ss Score
8.04
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
Exon sequences
Seq C1 exon
ACCTGCTGAAGATCACCAACTTGCGGGTAAACCTGACACGGCTACACACACTTGGGGACAACCTGCTTGACCCCCGGCGGGAGATCCGCGAGAAGTACTATTATGCCCTCTATGAGCTGGTCGTGCGTGGCAACTGCTTCTGCTACGGACACGCCTCACAGTGTGCGCCTGCCCCAGGGGCACCAGCCCACGCTGAGGGCATG
Seq A exon
GTTCATGGGGCCTGCGTCTGCAAACACAACACTCGCGGCCTTAACTGTGAGCAGTGTCAGGATTTCTATCACGACTTGCCCTGGCACCCGGCTGAGGACCGCCATAGTCATGCCTGCAAGA
Seq C2 exon
AGTGCGAGTGCCACGGGCACGCCCACAGCTGTCACTTCGACATGGCCATATACCTGGCATCCGGCAATGTGAGTGGAGGCGTGTGTGATGGGTGTCAGCACAACACAGCCGGGCGCCAATGTGAGCTCTGCCGGCCCTTCTTCTACCGGGACCCGACCAAGGACCTGCGTGACCCCGCTGTGTGCCGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022635-'11-9,'11-8,12-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005512=Laminin_N=PD(18.3=63.2),PF0005319=Laminin_EGF=PU(35.5=32.4)
A:
PF0005319=Laminin_EGF=PD(61.3=92.7)
C2:
PF0005319=Laminin_EGF=WD(100=95.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACCTGACACGGCTACACAC
R:
CTCCACTCACATTGCCGGATG
Band lengths:
253-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]