RnoEX0049277 @ rn6
Exon Skipping
Gene
ENSRNOG00000047768 | Lamb2
Description
laminin subunit beta 2 [Source:RGD Symbol;Acc:2988]
Coordinates
chr8:117270259-117270989:+
Coord C1 exon
chr8:117270259-117270461
Coord A exon
chr8:117270551-117270671
Coord C2 exon
chr8:117270801-117270989
Length
121 bp
Sequences
Splice sites
3' ss Seq
CCCTCCCTGTATCCGCACAGGTA
3' ss Score
8.7
5' ss Seq
GGAGTGAGT
5' ss Score
6.05
Exon sequences
Seq C1 exon
ACCTGTTGAAGATCACCAACCTCCGTGTGAACCTCACCCGGCTTCACACACTGGGAGACAACTTGCTTGACCCACGGCGGGAGATCCGGGAAAAATATTATTATGCTCTCTATGAACTTGTCATCCGCGGGAACTGCTTCTGCTATGGACATGCCTCACAGTGTGCGCCTGCACCAGGGGCACCGGCCCATGCTGAGGGCATG
Seq A exon
GTACATGGGGCCTGTATTTGCAAGCACAATACTCGTGGGCTCAACTGTGAGCAGTGTCAGGATTTCTATCAGGACCTTCCCTGGCATCCTGCTGAGGATGGCCATACTCACGCCTGTCGGA
Seq C2 exon
AGTGTGAGTGCAACGGGCATAGTCATAGCTGCCACTTTGACATGGCTGTGTACCTGGCATCTGGAAACGTAAGTGGAGGTGTCTGCGATGGCTGTCAGCACAACACGGCTGGGCGCCACTGCGAGCTCTGCCGGCCCTTCTTCTACCGTGACCCAACCAAGGACATGCGGGATCCAGCTGCGTGCCGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000047768_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005512=Laminin_N=PD(18.3=63.2),PF0005319=Laminin_EGF=PU(35.5=32.4)
A:
PF0005319=Laminin_EGF=PD(61.3=92.7)
C2:
PF0005319=Laminin_EGF=WD(100=95.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATCACCAACCTCCGTGTGA
R:
GATGCCAGGTACACAGCCATG
Band lengths:
255-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]