BtaEX0025062 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000044132 | NTN5
Description
netrin 5 [Source:HGNC Symbol;Acc:HGNC:25208]
Coordinates
chr18:55745678-55748252:-
Coord C1 exon
chr18:55748199-55748252
Coord A exon
chr18:55747915-55747995
Coord C2 exon
chr18:55745678-55746297
Length
81 bp
Sequences
Splice sites
3' ss Seq
AGGAGCCCGACCCTCCCCAGACC
3' ss Score
3.77
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
GAATCCTAGAGGCGACAACCACCCTTGCTACAACCCCTCATGCTTACAGCTCGG
Seq A exon
ACCCTCAGTGTCAAAACTATTGCAATACTTCGGACACCAGGATACACATGAGCCTTCAGAGGTACTGCCAACAGGACTACG
Seq C2 exon
TGCTCCACGCGCAGGTGCTGGCGTCCGAGGCCGCGGACACGACATGGCAGCGGCTGGCCGTGCGCGTGCTGGCCGTGTACAAGCAGGGAGCACAGCCCGTGCGCCGTGGCAGCCAGGCCGCCTGGGTGCCCCGCGCCGATCTGACCTGCGGATGCTTGCGCCTGCGCCCCGCCAGCCACTACCTGCTGCTGGGCAGAACGGCTGGCGGCCCAGATCCTACACGCCTCGTCCTCGACCGCCACGGCCTCGCGCTGCCCTGGAGGCCGCGCTGGGCCCGGCCGCTGCGGCGGCTGCAGCAGGAAGAGCGCGCCGGGGGGTGCCGCACCTTGCGGCCTTCGACCCTGAGCCCCGAACCCAGGCTCTAGAGCCGAAGCCCCGCTGCCTCGAATGCCATCGAAGGAGCTAGAAGCACCCACGGGAGGCGCCTTTTACCTCGACGCTGAGGCGTCTCTCAGCGAGCCAATCAGACGCCGCGGAGCACCAGACGTCACTGGCATGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000044132-'7-9,'7-6,8-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.053 A=0.000 C2=0.165
Domain overlap (PFAM):
C1:
NO
A:
PF0175916=NTR=PU(7.4=28.6)
C2:
PF0175916=NTR=PD(91.7=81.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAATCCTAGAGGCGACAACCAC
R:
GGCTGTGCTCCCTGCTTGTA
Band lengths:
151-232
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development