HsaEX0044066 @ hg19
Exon Skipping
Gene
ENSG00000142233 | NTN5
Description
netrin 5 [Source:HGNC Symbol;Acc:25208]
Coordinates
chr19:49164666-49167071:-
Coord C1 exon
chr19:49167018-49167071
Coord A exon
chr19:49166720-49166800
Coord C2 exon
chr19:49164666-49165298
Length
81 bp
Sequences
Splice sites
3' ss Seq
GACAGCCTGACCCTCCCCAGACC
3' ss Score
5.7
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
GAATTCCAGAGGCAACAACCACCCTTGCCACTACTCCTGGTGCTTATAGCTCTG
Seq A exon
ACCCTCAGTGTCAAAACTACTGCAATATGTCGGACACCAGGGTACACATGAGCCTTCGGAGGTACTGCCAGCAGGACCATG
Seq C2 exon
TTCTCCGCGCGCAGGTGCTAGCGTCCGAGGCGGCGGGCCCGGCATGGCAGCGGCTGGCCGTGCGCGTGCTGGCCGTTTACAAGCAGCGGGCGCAGCCCGTGCGACGCGGCGACCAGGACGCCTGGGTGCCCCGCGCCGACCTGACCTGCGGCTGCCTGCGCCTGCAGCCAGGCACCGACTACCTGCTGCTGGGCAGCGCCGTGGGCGACCCCGACCCCACGCGCCTCATCCTCGACCGCCACGGCCTCGCGCTGCCATGGAGGCCGCGCTGGGCCCGGCCCCTGAAGCGGCTGCAGCAGGAGGAGCGCGCCGGAGGCTGCCGCGGCGTGCGGGCACCCACACCCAGTCCCAGGCCGGAGCACTAGACGTGAGATGGGGCTGCCTCGAGCACCAACAAAGTAATTTGGGAGCGACTAGGAGCTGAGCCTTCTACCTCGACGGTGCACTGCAGAGAGCCAATCAGACGTCGCAGAGCCCCGACGACACTATGCTTGCGCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000142233_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.000 C2=0.240
Domain overlap (PFAM):
C1:
NO
A:
PF0175916=NTR=PU(23.5=28.6)
C2:
PF0175916=NTR=PD(91.7=81.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCCAGAGGCAACAACCACC
R:
GCCCGCTGCTTGTAAACGG
Band lengths:
143-224
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)