BtaINT0104254 @ bosTau6
Intron Retention
Gene
ENSBTAG00000044132 | NTN5
Description
netrin 5 [Source:HGNC Symbol;Acc:HGNC:25208]
Coordinates
chr18:55745678-55747995:-
Coord C1 exon
chr18:55747915-55747995
Coord A exon
chr18:55746298-55747914
Coord C2 exon
chr18:55745678-55746297
Length
1617 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
3' ss Seq
GACCTCTCCCCTTTCGGCAGTGC
3' ss Score
6.69
Exon sequences
Seq C1 exon
ACCCTCAGTGTCAAAACTATTGCAATACTTCGGACACCAGGATACACATGAGCCTTCAGAGGTACTGCCAACAGGACTACG
Seq A exon
GTGAGTGCCGGGGAGAACAAGGGCCAGCAGGCGCACAGGGGCTCTGATCTGCCTCCAAGCAACTCTCTTCTTTGGCCTTCACTTTCCTCATCTTAAATGGGAAGGGGTGCTGAACTCTAAAGGGCCTGTCCTGATCTAGAACCTAAAGGGACAGCAGACAATGGGCGGAAGGGGGAGTGGGGAGGGTTACTCCCTACCTTCCTAGGTCTCCTTTCTCCCTACGTTCTTGGTCTTGCAGAGTTTCACAATCTTCTTCAGCCTGACATCCCTGAGTGGGGGAGGTGGCCTCCTGAGGATGGAAAGAGAAAGGCAAACTGGTTGAAAGGAGGGACCCTTGCGCTGTCTTGTCTGTCTCAGGTCCTCCACCCTCCTTCAGGGCTGTAGCCCCATTCCCACAGACTCCCCCCCAGTTTCCTAATCCACCAGTCTACACCAGCCCCCTGAGTCCAGGGCCTATGACCTCAACTGTCTTGGACACTCGAGTTCAGCCCAGCCCCAGTTACTCCCCTCAGTGGTACAGGATCCCAGACCTCCCCTCCCTGAGGCTCACCATCTGGCCACTAGTATCCTTGGAACTCCAAACGTGGAGGTTTCTGCCCCCCCCCCCGCCCGCCCCACCTCCCATGGGAATCTTCCAGCCCATAGACTCAGCTTGCCCACCAGAGGGCTGCTCCCAACAGATCTCATCTCATCCCCTTAGAGGGGACACTTCTCTGAATCACCACTAGTAAGACCTCAACCCTGGGCTTCCCAGGACTGACCTCCTTCTGGCCCCCAAATTAATTCTAGATGCAGATCCCTCCTAGGGCAATATCTCTGTTTTCCAGGGGCTCTGTGTGCTCCTAATACTTTCTGACTCTCTGGCATTCGAGACCTGCTGCTGCTGCTAAGTTGCCTCAGTCATGTCCGACTCTGTGCGACCCAATGGATGGCAGCCCACCAGGCTCCCCCTTCCCTGGGATTCTCCAGGCAAGAACACTGGAGTGGGTTGCCATTTTCTTCTCCAATGCATGAAAGGGAAAAGTGAAAGTGAAGTCGCTCAGTCGTGTCCGACCCTCAGCGACCCCATGGACTGCAGCCCTCCAGGCTCCCCCGTCCATGGGACTTTCCAGGCAAGAGTACTGGAGTGGGGTGCCATTGCCTTCTCCGATTAGAGGCCTGGACCTGCCTTTTCTGCCTTGTTCCAGCCCCACCCACTGCAGGGTCCCGCGAGACCTCTAACCTTTAAGTCATTCCTATACCTGCTGTTTCTAATACGGTCTCAAAAGCATCCCTGGTGGTGCTTGCATATTTCCTGATGGGCACCTGGGTTCCTGGCCCAAGCCTGACCTCCTCTCCAGAGAGACCGCCCACCCACCCCTCCCCTTCACAATCACAATCCTGGGACCCAACCTCACACTCCAAACGCCTCGCCCTCCTTGTTTTGACCCGTGTCCTCAGAAAGACCTCACTCCTCACAGCACTGGGCCTCTCACCCTCAAAGCTTCAAGGTCTCTGTTCTTCCTGATGCGATTCTGGAAGCCCACCCTTGCGTCCCAGGCCCCTCCCCACCAAGACTAACCTCACGGGGCCCTCAGGCTACCCCCGGCCCAGGCCTGACCTCTCCCCTTTCGGCAG
Seq C2 exon
TGCTCCACGCGCAGGTGCTGGCGTCCGAGGCCGCGGACACGACATGGCAGCGGCTGGCCGTGCGCGTGCTGGCCGTGTACAAGCAGGGAGCACAGCCCGTGCGCCGTGGCAGCCAGGCCGCCTGGGTGCCCCGCGCCGATCTGACCTGCGGATGCTTGCGCCTGCGCCCCGCCAGCCACTACCTGCTGCTGGGCAGAACGGCTGGCGGCCCAGATCCTACACGCCTCGTCCTCGACCGCCACGGCCTCGCGCTGCCCTGGAGGCCGCGCTGGGCCCGGCCGCTGCGGCGGCTGCAGCAGGAAGAGCGCGCCGGGGGGTGCCGCACCTTGCGGCCTTCGACCCTGAGCCCCGAACCCAGGCTCTAGAGCCGAAGCCCCGCTGCCTCGAATGCCATCGAAGGAGCTAGAAGCACCCACGGGAGGCGCCTTTTACCTCGACGCTGAGGCGTCTCTCAGCGAGCCAATCAGACGCCGCGGAGCACCAGACGTCACTGGCATGCGCCAGCACCCAGGAGTCAGGAAGGCCTTAACTAAAGGCCGTAGAACTCTTGGTCTCTGGCTCGGACACTTGACCTTTGCCTTGTGGAGCAAGTCCCCTCAATAAAGTCTCAACTCTTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000044132:ENSBTAT00000063836:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.165
Domain overlap (PFAM):
C1:
PF0175916=NTR=PU(7.4=28.6)
A:
NA
C2:
PF0175916=NTR=PD(91.7=81.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGACACCAGGATACACATGA
R:
GCTCTTCCTGCTGCAGCC
Band lengths:
358-1975
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development