RnoINT0103718 @ rn6
Intron Retention
Gene
ENSRNOG00000021016 | Ntn5
Description
netrin 5 [Source:RGD Symbol;Acc:1565197]
Coordinates
chr1:101675474-101677596:+
Coord C1 exon
chr1:101675474-101675554
Coord A exon
chr1:101675555-101677189
Coord C2 exon
chr1:101677190-101677596
Length
1635 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
3' ss Seq
GACACGGTGTCTTCCCTCAGTTC
3' ss Score
7.16
Exon sequences
Seq C1 exon
ACCCACAGTGTCAAGGCTACTGCAATGTCTCCGTCAGCAGTGTGCACATGAACCTTCAGAAGTACTGTCAGCAGGACTACG
Seq A exon
GTAAGTGAGAGGAGAACAGGCCTGCCCTCTCCCCCATCCTCACTGTAAAAGGGAAAGGATGTTAGACCCTAAGGGACTGCTCTCCACCAGGATGAGACACAACAGAAGACAATGGTGGGAGACAGTGGGAGGAATGCCCCTGCTTCCTGTGCCTTTTTGTCCCTCATACTCTCCCACTTGCTGTGCATCCTGCCCTTTTGCCTTACCTCCTCTGAGAGCTGGAAGGAGAAGAGGGATGGGGATGAAGCGAAGGCCTTGTCATTTGCTGTCCCCCCCCCCAGTCTCACATCTGAGCCCTTGCTTCCCTCCCCACCCATGCACAGCAGCGCCCAATCCTGAGGCCTATGAGCTCAGCTCTCACATCTCAGGGACCAGGCCTAGCCAGAAAAGTACAAACCACTCCTGGTCCCCTCCTCCTGTCCCGGAGCATGGGCCCCCTTGCCTGAAGTATCATCACTTGCTTAAGTGTCACACGTGAGGTGGGGCTTCTCCCACCCTCTTCTCAGGGGCATTGATCCCACAGATCTGCCTTGCCAGCCAGAGCCTAGCCCCCAGGTCTTCCTGACCCTCCCCGACCACAGCACTGATTCATGGTAGCATGGCATCCGTCAAGTCTCAGGCCTTAGCACTCAATTCATTCTTTGGACCACCAGTTCACCCCCAAAGCCTTTCTGGCAAGACCCACCTCTCCTGAGGCCCCCAGTCCTGGGAATCTTCTCACTCTGTTACACTAATGCTCTGGACTTAGCTTAGCATGCTGGTACAGGCTCAAAATCTCCAGTTCCCGAGAAGCTGAGGCAGAAAGACTGCAGTGAGTTCTGGATATCGGCTTGGGCTAAAGAGTAAGTTCTAGACCAGCCTCAACATTTTAGTGAGACCTTGTTGCCCAAAAAGGAACCCTGGACTCTTGAGGCTACTGTTAGTAGTAACATGACTCCAATAGTTCCTGCCAGCATTATCTGAAGCTCCTAGAATGTTCTCCCTGATCTCTAGTGAGCATCACTCTGAACCTCCTCTTCCCTCATCCTTCTTAACCACAACCCTGAAACCCTGCTTCATATACTCTTCCTGATTCCATTTTTGGGCACACCCTATCCTCACTACCCCCACCCTCACCCCCAGCCTCACCCCCAGGTTCTGCAACTCACAGGGCCCTTACAGCCATGATCCTGAATTTCTCCCCTCCCCACCTCACATACCATTGACATCCACCACCCTAGACCACAGCGTATGTTCTTCCCAACTTCGAACCTGGCCTCCCTTTCATACATCTAGACCAGTGGTTGTCAACCTTCCAAATGTGGTGACCCCTTGTCCATGAAATAGTTCTCGTTGTTACTTTTTTTTTTCTTTTCTTTTTTTTCGGAGCTGGTCGTTGTTACTTCATAACTGTAATTTTACTACTGTTACGAATCGCAATGCAAGTATCTATGCTGGTCTAAGGAGGCCACTGCGAAAAGATCGGTAGTACCACAAGGGGGTCGCGACTCACACGTTGAGAATCACCGATCTAACCACCGATCTAGGCCCTTGCCTGCCCCTTCCCACTGCCACATGGTGGTGTCATCTCCATCAGGCCTGCCCTCACTCCTCAGGGCCAGCCTCCCACTTGCCTGACACGGTGTCTTCCCTCAG
Seq C2 exon
TTCTGCACGCCCGGGTTGCAGAGTCCGCACAGGTTTCAGCATCATCGTCGTTGTCCTCGTTGTCCGAGGCGGTAGGACCCGAATGGTGGCGGCTGGCCGTGCACGTGCTGGCTGTGTTCAAGCAGCGTGCGTGGCCCGTGCGCCGCGGCAGCCAGGAGGCCTGGGTGCCCCGCGCTGACCTGTCCTGCGGCTGCCTGCGCCTGCGCCCTGGCGCTGACTACCTCCTCCTGGGCAGAGCTGCGGAGAACCACACTGACCCCGCGCACCTCATCCTGAACCGCCACAGCCTCGCGCTGCCCTGGAGGCCACGTTGGGCCGGGCCGCTGCGGCGGCTGCAACAGAAGGAGCGCGGTGGCGCCTGCCGAGGCCTGCTGCCACCCACTCGGAGCCCTGGGCCTAGGAACTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021016:ENSRNOT00000028524:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.119
Domain overlap (PFAM):
C1:
PF0175916=NTR=PU(6.6=28.6)
A:
NA
C2:
PF0175916=NTR=PD(92.6=83.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTACTGCAATGTCTCCGTC
R:
CTGTGGCGGTTCAGGATGAG
Band lengths:
353-1988
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]