BtaINT0104253 @ bosTau6
Intron Retention
Gene
ENSBTAG00000044132 | NTN5
Description
netrin 5 [Source:HGNC Symbol;Acc:HGNC:25208]
Coordinates
chr18:55747915-55748252:-
Coord C1 exon
chr18:55748199-55748252
Coord A exon
chr18:55747996-55748198
Coord C2 exon
chr18:55747915-55747995
Length
203 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGA
5' ss Score
9.84
3' ss Seq
AGGAGCCCGACCCTCCCCAGACC
3' ss Score
3.77
Exon sequences
Seq C1 exon
GAATCCTAGAGGCGACAACCACCCTTGCTACAACCCCTCATGCTTACAGCTCGG
Seq A exon
GTAAGACAGGCTGGCCTACAAATCCCTGGTAGCAAGAAGGATCAGGGATGGGGTGATTGGGCCACCAGGAGGGGATCCAGGGGTGGTTCACTGAGCGCAGTCCCAAGGGTTCAGGCACCCCAGCTGTCCATCAAGATGGACTGTGGGGGATGGGCAGGGGCAGAATGCTGTAGCCCAGGCCTCAGGAGCCCGACCCTCCCCAG
Seq C2 exon
ACCCTCAGTGTCAAAACTATTGCAATACTTCGGACACCAGGATACACATGAGCCTTCAGAGGTACTGCCAACAGGACTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000044132:ENSBTAT00000063836:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.053 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0175916=NTR=PU(7.4=28.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTAGAGGCGACAACCACC
R:
CGTAGTCCTGTTGGCAGTACC
Band lengths:
133-336
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development