GgaINT0127113 @ galGal3
Intron Retention
Description
NA
Coordinates
chr18:2037090-2040448:+
Coord C1 exon
chr18:2037090-2037143
Coord A exon
chr18:2037144-2040374
Coord C2 exon
chr18:2040375-2040448
Length
3231 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
GCCTCCCCTCTGCCCCACAGACT
3' ss Score
9.47
Exon sequences
Seq C1 exon
AGATCCCCGCTGCGCCGCCCCCCACAGCTGCCAGCAGCACGGAGGAGCCCGCAG
Seq A exon
GTATGTGACCCCCTCCCCAACTCCTCAGTGCCACAGCAGACATCCTTTCTTTCCTTAAATGCACCAAATTATTGCACCGACCTCTAAGAGATGCGGATAACTTCTGTGCCCCCAACAGCTGAGTTTTCCAACCCAGGCAGGGCTTATGGGAGCGCGTGGGGCGATGTGGCCGAGCTGGCAGTGCTCAGGGGTTACCCCAAGTAGAAGAGCCTTACATGGGGTGTTTGGTGGTTGTAGCTGAGTTTTCTTGAGTCGGAGGACTGGAGAACCCACAATCCCCCATCAGAGGACAGAAAACCTGAGCGCTGCTTCTTGTCATGGAGGAGCATTGCCTCTATTTGTTTATATCTGTGTGCTCCCTGTGCCAAGCAACGCGGCCGCAGCTGTGCCCCAATGTAACAGCTCTGTGGGGCTGTGGGGTGGGATGTGGGTTACACAGGGCTGCCCCATTGGCACCTTCCATTCCCCCCTGCCATGTCCCCACACCAGCACCACCGTGGTCCCCTCCATCCCTATTGTTACCCAGAGGGACCCCCTGCCACCCCACATCTCAGCAAGGGGACCAACCCAACCCCTCTAACCGAGCACGGAGCCAGAGCAGGGGTGGAAGCATTGAACTTTTGGGGGCCCTGCCTGGTTCTGCTTCATCCCAATGGGAGAAAAAGGTTTACAAAGCTGCCAGTCACTGCTGTCTGATCTGTGCTAACCCGGATCGGAGTGGAGTGGGAGTGATTGCCGGAGGTGGATGATTTCAGCAGGAGGGTTTAAATGGAACCAGGTGATGGGATCAGTATGGCCACGTCTGGGTCTGCAGTGCTCCGAATGAGGAGGGGGGGCCCACCAGCTCCAGGGCGGGAGCTGCGAGTCCAGCATGAGACCAATCTGTTATTATTACATTATTATTATTATTATTATTATTATTATTATTACTACATTATTATTATTATTTTGAAGTGAAATGAACAGTTCCTCTTCCCACTCCCAAGGCGTCCCTGGCTGTGTCCCCTTGCTGAAGCACAGCACTTCTTCCCCATTACCACTCTGCCCTGGAGCAGAGCGCCCACTCTGTCCCTCCTGCTGACAGTGACACCGTGACATGGTGACAGGGTGACATGGTGACACGGTGACACTGTCCCACACAGCACCACTCGGTCAGGGAGCCGTTGTCAGATTGGGAAGTTATAGGGCGGCCAACGCTGCTGAGCGCCCATCCCTGCTTTCCATCCCCAGTGCTGCCGTCGAGAGGCTTTAATCTAATTACATGCTTTATTTGCGCCAATTTGTTTTCCAATCAATCTTGCTCAGCCAGAAGAAAGGAGGTTTCTGCGGGCTTGTTCGCACTCCTTGTTCCAAGGGAGAGGTTTGGGCAGTTCTCCTGGGTGGGAGTTGAGTTCTGCTGCCCCTCGCATGGGGCGGATGGCCCCATGGCACAGCCATAAGGGGCTTCTGGGGCATCCCAGGCACGGTGCTTTGGGAAGCAGCTGCAGAGTGGGGGTCCTGCCCAGGGCTGTGGAGCTGGGTGTGGTGCAGGGCTGTGGGGCAGAGGGTGCTCTGTGAGCTTTGGCACCCCCATGCTGGCTGTAGGTCCATCGGTCCACAGCGGCATTTGGGGCCCAACCTGGGGGAAATCAATGGGAATTCCGCTGTATAAATCAGGATTAGAAATGCAAATCCCATGGGGGTTCGAAGCCTCAAACCTGCAGTTTGAGTTACACACTGCAGCCAAGAAATGAGGCTGTAATTGCTCTGTCATGTCAGGATCGAGGGCTATTCATTTCCGTTCCCGACATGTGGCTTTGGTGGAGTATTAGTGACCCTTTAGGAACTGCAAGCACTCCAATTTGCAGCCCCCAGCCCACAGCCTGCATCCCACATCCATCCCACATCCAACCTGCAACCATTCCATATCCATCCCACATCCATCCCACATCCATCCCATATCCATTCTACATCCATCCCCTATCCATCCTGCATCCATCCCACATCCATCCAATATTCAACCTACGTCCATCCCATATCCATTCTGCATCCATCCCATATCCATCCTATATCCATCCTGCATCCATCCCCCATCCATCCTATATCCATCAAAGATTCATCCTGCATCCATCCCATATACATCCTACATCAATCGCACATCCATCCCATATCCATCCTATATCCATCGTGTATCCATCGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCATATCCATCCTACACCCATCCCATATACATCCTACATCCATCCCACACCCACCCAGCCCCACTATTGTGGGGTTCAGCCCTGCACTTTGCTTCCCTGCAGCGTTCAGCCTCACACTCTCAGCTCCAGCTCTGCAACCAAAAATGAAGTGCATTTACAAAACCAAACTGAGCACAGCTTTGCAGCCCCCACCTCCATCTCTGCTCACCTCCATGTACCACCAGTTCCTTCCTCAGCCCCACTGCCAGGCTGACCCCACTGGATTGGTATGACAGTGGGTCTCTGTGGGGTGAGAACGGGGCTGTGGGGGCACTGTGGAAGGGGTCTCTGTGCCATAGGAGAGAGAGAACTGCTGACAGCCCCCGGCCCCACAGGGGGGTGTCCGGGTACATCCCACCACAGCTTCTCCTCATGTTCCGGATCATTAATGGTGTTTCCCTGCCTCCCCTCTGCCCCACAG
Seq C2 exon
ACTGTGACTCGTACTGCAAAGCCTCCAAGGGGAAGCTGAAGATCAACATGAAGAAGTACTGCAAGAAGGACTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023626:ENSGALT00000039331:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]