GgaINT0127113 @ galGal4
Intron Retention
Gene
ENSGALG00000023626 | NTN1
Description
Netrin-1 [Source:UniProtKB/Swiss-Prot;Acc:Q90922]
Coordinates
chr18:2061909-2064575:+
Coord C1 exon
chr18:2061909-2061962
Coord A exon
chr18:2061963-2064500
Coord C2 exon
chr18:2064501-2064575
Length
2538 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
GCCTCCCCTCTGCCCCACAGACT
3' ss Score
9.47
Exon sequences
Seq C1 exon
AGATCCCCGCTGCGCCGCCCCCCACAGCTGCCAGCAGCACGGAGGAGCCCGCAG
Seq A exon
GTATGTGACCCCCTCCCCAACTCCTCAGTGCCACAGCAGACATCCTTTCTTTCCTTAAATGCACCAAATTATTGCACCGACCTCTAAGAGATGCGGATAACTTCTGTGCCCCCAACAGCTGAGTTTTCCAACCCAGGCAGGGCTTATGGGAGCGCGTGGGGCGATGTGGCCGAGCTGGCAGTGCTCAGGGGTTACCCCAAGTAGAAGAGCCTTACATGGGGTGTTTGGTGGTTGTAGCTGAGTTTTCTTGAGTCGGAGGACTGGAGAACCCACAATCCCCCATCAGAGGACAGAAAACCTGAGCGCTGCTTCTTGTCATGGAGGAGCATTGCCTCTATTTGTTTATATCTGTGTGCTCCCTGTGCCAAGCAACGCGGCCGCAGCTGTGCCCCAATGTAACAGCTCTGTGGGGCTGTGGGGTGGGATGTGGGTTACACAGGGCTGCCCCATTGGCACCTTCCATTCCCCCCTGCCATGTCCCCACACCAGCACCACCGTGGTCCCCTCCATCCCTATTGTTACCCAGAGGGACCCCCTGCCACCCCACATCTCAGCAAGGGGACCAACCCAACCCCTCTAACCGAGCACGGAGCCAGAGCAGGGGTGGAAGCATTGAACTTTTGGGGGCCCTGCCTGGTTCTGCTTCATCCCAATGGGAGAAAAAGGTTTACAAAGCTGCCAGTCACTGCTGTCTGATCTGTGCTAACCCGGATCGGAGTGGAGTGGGAGTGATTGCCGGAGGTGGATGATTTCAGCAGGAGGGTTTAAATGGAACCAGGTGATGGGATCAGTATGGCCACGTCTGGGTCTGCAGTGCTCCGAATGAGGAGGGGGGGCCCACCAGCTCCAGGGCGGGAGCTGCGAGTCCAGCATGAGACCAATCTGTTATTATTACATTATTATTATTATTATTATTATTATTATTATTACTACATTATTATTATTATTTTGAAGTGAAATGAACAGTTCCTCTTCCCACTCCCAAGGCGTCCCTGGCTGTGTCCCCTTGCTGAAGCACAGCACTTCTTCCCCATTACCACTCTGCCCTGGAGCAGAGCGCCCACTCTGTCCCTCCTGCTGACAGTGACACCGTGACATGGTGACAGGGTGACATGGTGACACGGTGACACTGTCCCACACAGCACCACTCGGTCAGGGAGCCGTTGTCAGATTGGGAAGTTATAGGGCGGCCAACGCTGCTGAGCGCCCATCCCTGCTTTCCATCCCCAGTGCTGCCGTCGAGAGGCTTTAATCTAATTACATGCTTTATTTGCGCCAATTTGTTTTCCAATCAATCTTGCTCAGCCAGAAGAAAGGAGGTTTCTGCGGGCTTGTTCGCACTCCTTGTTCCAAGGGAGAGGTTTGGGCAGTTCTCCTGGGTGGGAGTTGAGTTCTGCTGCCCCTCGCATGGGGCGGATGGCCCCATGGCACAGCCATAAGGGGCTTCTGGGGCATCCCAGGCACGGTGCTTTGGGAAGCAGCTGCAGAGTGGGGGTCCTGCCCAGGGCTGTGGAGCTGGGTGTGGTGCAGGGCTGTGGGGCAGAGGGTGCTCTGTGAGCTTTGGCACCCCCATGCTGGCTGTAGGTCCATCGGTCCACAGCGGCATTTGGGGCCCAACCTGGGGGAAATCAATGGGAATTCCGCTGTATAAATCAGGATTAGAAATGCAAATCCCATGGGGGTTCGAAGCCTCAAACCTGCAGTTTGAGTTACACACTGCAGCCAAGAAATGAGGCTGTAATTGCTCTGTCATGTCAGGATCGAGGGCTATTCATTTCCGTTCCCGACATGTGGCTTTGGTGGAGTATTAGTGACCCTTTAGGAACTGCAAGCACTCCAATTTGCAGCCCCCAGCCCACAGCCTGCATCCCACATCCATCCCACATCCAACCTGCAACCATTCCATATCCATCCCACATCCATCCCACATCCATCCCATATCCATTCTACATCCATCCCCTATCCATCCTGCATCCATCCCACATCCATCCAATATTCAACCTACGTCCATCCCACATCCATCCCATATCCATCCTATATCCATCGTGTATCCATCCCCCATCCAGCCTATATCCATCCCATATCCATCCTACACCCATCCCATATACATCCTACATCCATCCCACACCCACCCAGCCCCACTATTGTGGGGTTCAGCCCTGCACTTTGCTTCCCTGCAGCGTTCAGCCTCACACTCTCAGCTCCAGCTCTGCAACCAAAAATGAAGTGCATTTACAAAACCAAACTGAGCACAGCTTTGCAGCCCCCACCTCCATCTCTGCTCACCTCCATGTACCACCAGTTCCTTCCTCAGCCCCACTGCCAGGCTGACCCCACTGGATTGGTATGACAGTGGGTCTCTGTGGGGTGAGAACGGGGCTGTGGGGGCACTGTGGAAGGGGTCTCTGTGCCATAGGAGAGAGAGAACTGCTGACAGCCCCCGGCCCCACAGGGGGGTGTCCGGGTACATCCCACCACAGCTTCTCCTCATGTTCCGGATCATTAATGGTGTTTCCCTGCCTCCCCTCTGCCCCACAG
Seq C2 exon
ACTGTGACTCGTACTGCAAAGCCTCCAAGGGGAAGCTGAAGATCAACATGAAGAAGTACTGCAAGAAGGACTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023626:ENSGALT00000039331:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0175916=NTR=PU(7.5=30.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]