RnoINT0103717 @ rn6
Intron Retention
Gene
ENSRNOG00000021016 | Ntn5
Description
netrin 5 [Source:RGD Symbol;Acc:1565197]
Coordinates
chr1:101675030-101675554:+
Coord C1 exon
chr1:101675030-101675083
Coord A exon
chr1:101675084-101675473
Coord C2 exon
chr1:101675474-101675554
Length
390 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
GAGAGCATGGCCCTCTCCAGACC
3' ss Score
1.26
Exon sequences
Seq C1 exon
GAATTCCAGAAGCAACAACTGCCCTTGCTACTACTCCTGTTGCATCGCGATCAG
Seq A exon
GTAAGAGGTTGGCAGAGACATTCCCAGCAGCAAAGGGTGTTCAGGGTGGGATGACTGGGGAGGGCACCAAGCCCATCTCTGTTGGTTTTGGTTTGCTTTATTTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTTTTTATAGACAGGGTTTTTCTGGGCAGCCCTGGTGGAACTTGGTCTGTAGACCAGGCTGGCTTTGAACTCAGAGACTGGCCTGCCTTTGCCTCCCAAGTGCTGGGATCAAAGACATGCGCCACTATAGCTGGCCTCCAGGCCTTCTTGAGGGTGCAGACAGTCCAGCTGTCTGTGGAAATGGGGTGGGGAAATGGGCTACGACCCAGACCGTGGGAGCCCACTGCAGAGAGCATGGCCCTCTCCAG
Seq C2 exon
ACCCACAGTGTCAAGGCTACTGCAATGTCTCCGTCAGCAGTGTGCACATGAACCTTCAGAAGTACTGTCAGCAGGACTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021016:ENSRNOT00000028524:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.158 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0175916=NTR=PU(6.6=28.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]