GgaINT0012417 @ galGal3
Intron Retention
Gene
ENSGALG00000009208 | NET3_CHICK
Description
NA
Coordinates
chr14:14766468-14770645:-
Coord C1 exon
chr14:14770592-14770645
Coord A exon
chr14:14766543-14770591
Coord C2 exon
chr14:14766468-14766542
Length
4049 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
CCTCTGTTCCTCCCCTGCAGACT
3' ss Score
12.31
Exon sequences
Seq C1 exon
AGATCCCTGCCATCAACCCGACCTCTCTTGTCACCAGCACGGAGGCACCTGCAG
Seq A exon
GTAAGTGGTCTGCACACCCGGCCCCAGCCTGCTCAGAGACACCGCCTCCACCCTCTGCCCCACAGCACACCTATCAGGTGTGCCAAACCTCTCCAAACCCACATCACCAGCCACAGGGTTGCCTGTAGTGAAAGAATGAACAAGAGTGGAAATCCTCTGTGTTTCTGGAAAGGGACCAAAAGCCTGCAGAGCTGCTGACGCAGGGAGCACCAGGGCTGGCGGTGCATAGGCTGTGCCTGCTTTCATGGGGACCAGGAGGTGCATTCAGGGCCTTTGGGGTCTGCAGCAGGCCAGGGGACAGGTGCTTGTCTTTCCTTGCTCTGGTTTGGGCATGGAGGGTGATGCGGGTGGAGGTGAAGGCTGCTCTCCAGCTTGCTTTGCTTTCTGGCCATGAAGCATCCAAGCAGAAGCTGGGAATGCCAGAGAAGGGGCTTTGGTGAAAGGAAGATGGAGTGGATTTGAGTGATTTTGTTGTAAACAGAGAGGGACGCGTGGGGCAGAGTTAATCGGGGTGACTCCCTCCAGTGCTTTATAAATAGGAGCATTCTTAGTATCCTGTCTGATATTTTCAGCTGCATGAAAATAAATGGCACTCAGTGGAGACCAAAGCATTCACTTTGATGGAGCAGGTCTGTGTTCAGCAGCCCGTCTCTGTACCTGTGCCTTGTTGGAGGGTTTCTGGCTTCTAGCTCCAGTGCAGCATAGCCCACCTCTGCCCACAGCCTGCACCTGAGGGGTCCATCAGGACCCTCTTGGGATGGCTGGGCACGGCCAGGGGCTGTCCAGGGCTGTGCACTTCGCCCTATCCCCTCCCTCTGCCTGCACCCCTGCTACCTCCCTGGAGCCCCAGAGCCCCCTCCCCTCCGCCCCACAGCAGGTGTGCCTGCAGGAACAGGGGCACATTGTTCAGGGCAGCGGCCGCTCAGGTGCTTCCCCCCCACCACATCCCGGCCCTGTCTGCATCCGGGCTGTGCGCTGACACCGCCATCCCATCCCCACGCTTTGCTCCCCAGCCCCTCACAGCCGCTGGGGTCCGGCTTTGATCCCTGCCCAAAAGCTGGCCGGCTTTACAGCAAAGCGTTCTGCCCCCATTTCTTGTAATTTTTGATTATTATTAGCCCCAAATATTTTCCACTTTGCAAAAAAATAATAATAGTTAAAAAAAAACAACCCAACAACCTTGTTCCCCGTTAGTGGAATTAACAAAACCAGCGGAGTGCAAAAGAGGGCTTTAAAGGAATTCAAAGTCAGCAGTAAAAGATTTGCAGCCGTAACACCTAATTAAGTTACATCTCCCTTAAAACCAAATATTCCTTCTCTTTTTTTTTTTTTCGAGGCACGGAGAAGTCAACCAGATGTGCAAACCCACCCCCCCCCCAACCCCAGCGCTGGGCATCCCATAGCCCGGTGGGGACGTGGGGCTGGGATCCCGCCTGGCACCCCACGCTCAGTTCTGCAGCGCATTGAGGCCCATAGGCACACACGAGTCTTCTTCATTTATTTTTTCCCCCCAGGATTCTTACATAAATGGAGCGGGAACTGTTTTTATTTTTGAGGAACGTTCCTCAGCACAAAGCTGAGGTTAAAAGTCCCCAAACGAATCCCAAACTGTTAATTCCAAATGCCGTCTCTGGCTTTTCAGAATCGCAGTTTTATGATGTTAATCATGAGCGGGAGCCCAGGGCACTTATTGTTTTCCTTTCTTCTTTTCTTCCTTTTCTTTGTTCCCAAGCACAGAGCCGGCGGAGGGCTGGGGCTGGCAGGTTGACCAGGGCTGCCCCGCAGCGCAGCGCCCCATAGCGCACCGCCGCCCCATAGCGCACCGCCGCCCCATAGCGCACCGCCGCCCCATAGCGCACCGCCGCCCCATAGCGCACCGCCGCCCCATAGCGCATCGCCGCCCCATAGCCCGGCTGTGGCGGGGCTGAACGCGGGAGGGTTTCCGCGGAGCTTTCTCCGCCTGGCCCCGCTTTGTGCGGCGCTGGCTGCTACTGCGGTGGCTTTGCTCCCAACCCCCGTCTCCAGCAGCGGAGGGGACCGCGAGCCCATATGGTCCTGTGTGTCCTTGTGAAACTGCAGCTCGGCTCTGGCCAGATTTGCAAGGAGCTGAAAGCGGCCCCAGCGGGGTTTTCGCTTCACAGGATCCTAAAGCGTGGCCCGCTCTGGAGATGCTGCGCACTGCCAGCCGCAGCGTGCCGTGCCCCCGGGCTCTGTCCCCGCTGCCACCAATGGCTCCGTCCCTGTGCACAGCTCCCAGGAGGGGATGCGGCCGCCGGGCACCCTGTCAAGCTGCAAGAAGAATGCAATTAATCACTCCTGCTGCTCCTCCTTCCCTTTATGATGCCTCCCCTCTTTCCCCCTGGAAGCATTCTGGTTTCTCCGAGAAAAATCACTCCAATCCACAAAATGTGTTTTCTGCCCCCGCAGATGACTCTACAGCTTGTGGTACTTAAAAACCACTCTGGTCAAGAAAGACTCAGCCCCATGGGGGGGTCGGTTTCTGGCAGCGCTCCTCAGTCCCTTCTGCCTCTCCAAGGTCCCTCCTGTCCCTGTGTGGTGTCCCCGTGTGGCTCGGTGGTGCTGGGGACGGAGGACCCTCATGGGGACAAGGATGGGGATGGGGCGGTTATGGCAGCCCAGCGCAGGGGCAGCTCAGTAGGGGCACGGTGCTCAGCAGTGGGGCTGAGCCGAAAAGCAGAGCTCACCCCACTGTGCCAGGAATTGGCTTCGTGCTGAGCCGCTTCTGTCGGTGACAAATTTGGAACAGGCGGCACAAAGTCCCCACTGAAAGGGAGCTGAGCAGAAAGGGGAGCGGCAGAGCTCAGGATGAGTTTGTGCTTCTGGGCTTCTTTCTTTCCTCTCTCTCCTTCCTCCCCTTGGCACAGAGTGCTGCTATTTCCCCACCGTCCCCCTCCATCGCCAGCGATCGCTGTGGCAACCCGCAGACAAAGGCAGCTCAGTGGCTGCCCTCTGTCCTGGGACTGGTGAGGGCTCTGCCAACTGGACAGAGAACCTGGGAGAGGGAGAGAAAGGAAGAAAGATGGGCTTAGAAAAACATGCCATTTGGAAAGAGACAAATTGAGATGTTCAAAGGAAGGTGGCAGGGGCAAAGAAAGGAGGAGAACTGGGCTGCTTCGGGCAATTGTTGGGATCAAAGCCTTTGGGGAGAAGGAGAGAGGCATTCCTGGCCTGCCCTCCCTCTGCTTGAGATGCAAATCGGAAGCCTTTAGAAATGCACAGAAAAAAAGCCTCCTGGAGGACATGAGCCTCTGCCCCAGCATGGGAAGGAATGGCAGGGAGGGATGCTGCAGGGAAGGAGGGATGCTGCACAAAGAGAAGGATACCGCAGGAAAGGAGGGATGCTGCAGAGAAGGAGGGATGCTATAGGAAGGGATGTTACAGGGAGGGACGCTGCCTGTGTGGGTGTGTGAAGGAAGCTCAGCTCAGCGTGGTGACCTCCCTGGCCGTGCTTGGTCAGTCCCAGCAGGAGATGCTTGGGCAGCAGGGAGTGACCTCACCTTCCAGCTTCCCCTGTTCCTAAGACCCCTTGAGGGCTTTCGGGCCCCACAAAAGTAAGGACCACGGTCCGGACTCAGTCCCTTGCTGTAGAGTCAGATGCTCCTTTGGGGTTCTTCCACCCACTCCTGCCTCCCAGAGGAGGGTCCCCAGGCTCCTTCCACCAGCCATGTCCTGAATAATCCTTCATGGCATTGTCACTGTCGTCACAGGAGGGGCTGTGGCCAGCCTGAGAGGCCCGAGGGCACTTGGCTTCTCCTCCACACTGCTGTGGCTTTAGTGCTGTGTTTTGGGGGCTGCAGTGGGGCCAGTCTCAGCCTGCAAGAGCTGCTGGGATAATAGGGGGACACAGCAGGGCTCAGGGGCCCCACTGTTAGCAGCATCCCGGGCCTGGCTCTGAGCCTTCTGGAGGATGCTGGGACAGGGAAGCCCACTCTGGACATGCCCCCACCAAGACACCTTTGCCCACAGTGGGACAGGGCCCCATACAAAGTGCTGTGCCACATGCTAAACCCTCTGTTCCTCCCCTGCAG
Seq C2 exon
ACTGTGACTCCTACTGCAAGCCAGCCAAAGGCAACTACAAGATTAACATGAAGAAGTACTGCAAGAAGGATTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009208:ENSGALT00000014992:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0175916=NTR=PU(7.5=30.8)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]