HsaINT0116389 @ hg38
Intron Retention
Gene
ENSG00000162068 | NTN3
Description
netrin 3 [Source:HGNC Symbol;Acc:HGNC:8030]
Coordinates
chr16:2473268-2473503:+
Coord C1 exon
chr16:2473268-2473318
Coord A exon
chr16:2473319-2473428
Coord C2 exon
chr16:2473429-2473503
Length
110 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
GCCTCCCACCTTCTACCCAGACT
3' ss Score
5.92
Exon sequences
Seq C1 exon
AGACCCCTATCCCTGGACCCACTGAGGACAGCAGCCCTGTGCAGCCCCAGG
Seq A exon
GTGAGTGGACACAGGACAGGGCCCCAGACTGGCATGACTTTGGGGGAGGGGGCTCTGGGAGGAGAGGGTGGGGAAAGGGAGTCTGTGCCAGCCTCCCACCTTCTACCCAG
Seq C2 exon
ACTGTGACTCGCACTGCAAACCTGCCCGTGGCAGCTACCGCATCAGCCTAAAGAAGTTCTGCAAGAAGGACTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162068:ENST00000293973:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.611 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0175916=NTR=PU(7.0=30.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACCCCTATCCCTGGACCC
R:
AGTCCTTCTTGCAGAACTTCTT
Band lengths:
123-233
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development