BtaINT0104240 @ bosTau6
Intron Retention
Gene
ENSBTAG00000045625 | NTN3
Description
Bos taurus netrin 3 (NTN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001206905]
Coordinates
chr25:1978937-1979197:+
Coord C1 exon
chr25:1978937-1978987
Coord A exon
chr25:1978988-1979122
Coord C2 exon
chr25:1979123-1979197
Length
135 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
3' ss Seq
CTCTTGCTCCCTCCTCCCAGACT
3' ss Score
9.56
Exon sequences
Seq C1 exon
AGACCCCTGTCCCTGGACCCACTGAGGAGAGCAGTCCTGTGGCGCCCCAGG
Seq A exon
GTGAGCAGAGATCCCAGAGGGGCATGTCCTTGGGGGGAGGGGGCGGTGGTTTCCCAGAGGGCCTGAGGAGAGGGTGGGAGGAGGGGGGAAGGAGATGGGGATCTGTGCCAACCTCCTCTTGCTCCCTCCTCCCAG
Seq C2 exon
ACTGCGACTTGCACTGCAAACCCGCTCGTGGCAGCTACCGCATCAGCCTGAAGAAGTTCTGCAGGAAGGACTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000045625:ENSBTAT00000063051:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0175916=NTR=PU(7.0=30.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCCCTGTCCCTGGACC
R:
CGTAGTCCTTCCTGCAGAACT
Band lengths:
125-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]