HsaEX1026544 @ hg38
Exon Skipping
Gene
ENSG00000122417 | ODF2L
Description
outer dense fiber of sperm tails 2 like [Source:HGNC Symbol;Acc:HGNC:29225]
Coordinates
chr1:86348737-86352984:-
Coord C1 exon
chr1:86352859-86352984
Coord A exon
chr1:86351922-86352208
Coord C2 exon
chr1:86348737-86348878
Length
287 bp
Sequences
Splice sites
3' ss Seq
TGATACTGTGTTTTTTCCAGGAT
3' ss Score
10.59
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
GTTGCTGAAGAAATAGAGAAAATGTCATCTAGAGAGAGTGCTTTACAAATTAAAATATTAGATCTGGAAACTGAGCTTAGAAAGAAAAATGAAGAACAAAATCAACTTGTTTGCAAAATGAACAGT
Seq A exon
GATCCAGAGACTCCATGAAATCTATTTTTTTAATTCCCAAGTGTCTAAAAAGTTGAAAACCTAAAAGATTCAAGAGTTAAATGATTTTTGGCATGCACAATTTGATTTTATTGCCATCAAAAGTTTCATGACAACTTAGTCAGAACAAAACGTCGATCACCTTTAATTTAGCACAGGCCTTCCATTTATTTCTAAACTTTTTTTTAACTCACCATTTGACTTTCTGATATTGTAAAATGTGTGTGCTGTTTTTTTGTGTAATTGAAGCCTCTGAAAAAATAAATGAG
Seq C2 exon
AAAGCACAACATCAGGAAGTGTGTTTGAAAGAAGTACAAAATAGTCTTGAGAAGTCGGAAAATCAAAATGAGAGTATTAAGAATTATTTACAGTTTCTTAAAACTTCTTATGTAACAATGTTTGAATAAATTGTCAAATTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122417-'55-50,'55-49,56-50
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.347 A=1.000 C2=0.120
Domain overlap (PFAM):
C1:
PF059116=DUF869=FE(20.7=100)
A:
PF059116=DUF869=PD(1.0=33.3)
C2:
NO
Main Inclusion Isoform:
ENST00000460698fB21640
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGCTGAAGAAATAGAGAAAATGTC
R:
AATACTCTCATTTTGATTTTCCGACT
Band lengths:
204-491
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains