HsaEX1026664 @ hg38
Exon Skipping
Gene
ENSG00000184792 | OSBP2
Description
oxysterol binding protein 2 [Source:HGNC Symbol;Acc:HGNC:8504]
Coordinates
chr22:30694076-30741369:+
Coord C1 exon
chr22:30694076-30694344
Coord A exon
chr22:30695376-30695553
Coord C2 exon
chr22:30741161-30741369
Length
178 bp
Sequences
Splice sites
3' ss Seq
CCTGCCTCTTCTGCGACCAGGAC
3' ss Score
8.82
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
AACCTCTGCGGAAGCCTCACAGACTGCCAGCCTACCCAGGGATCCCGGGAGGTCCAAGTTCAGAATCCCACTTTGAGATGTTTCTTGTACTAAAACGCTTGGTTTACAAAAAGTCTTCCCCTATTTGTTTAGAGAACCCGAACGATGTCGTCACTGGCAGCGAAGCGCCTTGGCATGAACCGTAGGCCAGCTGGCTCAGGAGGTGGAGGCGGTGAGGCGGCCACTTGGGGCCACCGCTTCTGGCGGCCGCAGGAGCGACCCACAGACAG
Seq A exon
GACAGGCGAAGACTCCTCTTGGGGTTCCAATGTCGGGGACTGGCACGACCTCCAGTGCCCCACTGGCCTTACTGCCTCTGGACAGCTTCGAGGGCTGGCTTCTCAAGTGGACCAACTATCTGAAGGGCTACCAGCGCCGCTGGTTCGTGCTGGGCAATGGTTTGCTCTCTTACTACAG
Seq C2 exon
AAATCAGGGTGAAATGGCCCACACGTGCCGTGGAACCATCAACCTGTCCACCGCGCACATTGACACGGAGGACTCTTGTGGTATCTTGCTGACCAGTGGGGCCAGGAGCTACCACCTCAAGGCCAGCTCAGAGGTGGACCGGCAGCAGTGGATCACCGCCCTGGAGCTGGCCAAGGCCAAGGCTGTCCGCGTGATGAACACTCATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184792_MULTIEX1-1/3=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=0.938 A=0.623 C2=0.202
Domain overlap (PFAM):
C1:
PF154091=PH_8=PU(3.3=4.8)
A:
NO
C2:
PF154091=PH_8=PD(95.1=81.7)
Main Inclusion Isoform:
ENST00000438716fB21708
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAGAGAACCCGAACGATGTCG
R:
CCCCACTGGTCAGCAAGATAC
Band lengths:
242-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains