HsaEX1026761 @ hg38
Exon Skipping
Gene
ENSG00000187950 | OVCH1
Description
ovochymase 1 [Source:HGNC Symbol;Acc:HGNC:23080]
Coordinates
chr12:29455249-29462008:-
Coord C1 exon
chr12:29461550-29462008
Coord A exon
chr12:29460255-29460354
Coord C2 exon
chr12:29455249-29455405
Length
100 bp
Sequences
Splice sites
3' ss Seq
GTGTTCATTCTTCCCCTCAGTCT
3' ss Score
9
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ATGGTGGCCTAGCAAGTCGCCTACAGCAGATTCAAGTGCATGTGTTAGAAAGAGAGGTCTGTGAACACACTTACTATTCTGCCCATCCAGGAGGGATCACAGAGAAGATGATCTGTGCTGGCTTTGCAGCATCTGGAGAGAAAGATTTCTGCCAGGTGAGAGGATTCTGGTTTTATACAGGAAGGTGGAAAATTGCCATCTGCTGAAGAGTTTCTATAGACAGGAGAAACCATTGCTGAAATCACCAACTTGTCACGTGCTTCAATATCATATCCCTGCATGAAGACCAGTGGGGCAACAGAAGTAATAAGTTAATTAATCCGAATTTGCTGAGATGTCAGAGAGTGGCCGGAAGCAGCTGTACAGCGACAAAGGCCGGTGGGTTCATAGAGGAGCTGGTGAGAAGGCAGGAAATGGCAGAGCTTCTAAGCAGGCCTGAGCAAGGGAAGATGTGTTCAG
Seq A exon
TCTATTGTAGGATTTGAGGGATGGCTTTTCTTTCTTCAACAAGAAAATCACAACTAATTATGTTGTCTTTTACATATTTGACAGCATCTAACATTACAAG
Seq C2 exon
GGAGACTCTGGTGGGCCACTAGTATGTAGACATGAAAATGGTCCCTTTGTCCTCTATGGCATTGTCAGCTGGGGAGCTGGCTGTGTCCAGCCATGGAAGCCGGGTGTATTTGCCAGAGTGATGATCTTCTTGGACTGGATCCAATCAAAAATCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187950-'24-24,'24-23,25-24
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(21.9=100)
A:
PF0008921=Trypsin=PD(0.1=0.0)
C2:
PF0008921=Trypsin=PD(19.7=86.8)
Main Inclusion Isoform:
ENST00000318184fB21767
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGTGGGGCAACAGAAGTA
R:
CCCCAGCTGACAATGCCATAG
Band lengths:
248-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains