HsaEX1026766 @ hg38
Exon Skipping
Gene
ENSG00000257599 | OVCH1-AS1
Description
OVCH1 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:44484]
Coordinates
chr12:29389294-29464741:+
Coord C1 exon
chr12:29389294-29389853
Coord A exon
chr12:29461734-29461934
Coord C2 exon
chr12:29464405-29464741
Length
201 bp
Sequences
Splice sites
3' ss Seq
CCCCACTGGTCTTCATGCAGGGA
3' ss Score
7.45
5' ss Seq
ATAGTAAGT
5' ss Score
8.65
Exon sequences
Seq C1 exon
GACCCGGGCCGGCGGGTGAACTGGGGGGCCCCGGGACAGGCCGAGGCCTCTGCCCTGCAGATACCGGAGGCCTCTGCTGTGGCTGCCCACTGGCTGTGCCCAGGCCTTGAAGCCGCAGCGAACCTCTCTTTCCCACCCCACCTGGATGACTGATGGCGGCGGCTGCGTCTCCCCGACGGGACCCCGCCGGCCGCCGCGTCTCCCGACCCAAGCCTGCCGGGCCTCGACGAAACCCCCGCAGAGTCGCTGGGACGCAGCGCCTTTGGGCGGCGCCGGGCGTGGTGGGCCGGAAAGTATGGCGGCCGCTTGAACGCCGCGCGGCGGAGGCCATTAAGGCGTGGAGGGCCCGGGAAGGCGGCCTAGGGACGCAAGCAGGCTCGGCCACCTCTTTAGGCCACGGAGCCGCGCAGATCCGGTTCCCGGGTGACCACTCTGTCGCCATTGGGCGAGACCGACCTAGTCCTGACGACAACGGACAAAGGCCTTCAGGGGCCTGGAAG
Seq A exon
GGATATGATATTGAAGCACGTGACAAGTTGGTGATTTCAGCAATGGTTTCTCCTGTCTATAGAAACTCTTCAGCAGATGGCAATTTTCCACCTTCCTGTATAAAACCAGAATCCTCTCACCTGGCAGAAATCTTTCTCTCCAGATGCTGCAAAGCCAGCACAGATCATCTTCTCTGTGATCCCTCCTGGATGGGCAGAATA
Seq C2 exon
AAAGAAGAGGGGCTGAAGCGGATGCTGCTTGATATCATTTACATGACCTATTTTCAAAAATAACAACTGGCATTAATGTTTATGCAACAAAAATATGCTTACCTGCACTGATGCTTCCCCATCCGGTCACAGCACAGATCTCCGAGGAAAATAGAGGCTCTGCGCTGTGTGGGAGACATACTGGCCTCACCACCGAGTTGTACTCCAGAGGAGAGCTTAGTTGTATTAGGGCAATGTCAGAGTCATAACTTAGTGTGTTAAAGTCTTCATGCACTATTATGTGTTTGGCCCTTCTCACCTGTATCGGTGGCAAGTAAGCAAATTACAACGTAAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000257599-'0-13,'0-12,3-13
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCTTTAGGCCACGGAGCC
R:
GAGGCCAGTATGTCTCCCACA
Band lengths:
304-505
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains