HsaINT1025909 @ hg38
Intron Retention
Gene
ENSG00000187950 | OVCH1
Description
ovochymase 1 [Source:HGNC Symbol;Acc:HGNC:23080]
Coordinates
chr12:29443361-29444280:-
Coord C1 exon
chr12:29444145-29444280
Coord A exon
chr12:29443501-29444144
Coord C2 exon
chr12:29443361-29443500
Length
644 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
3' ss Seq
TTGTTTCATCTATGCCATAGTTG
3' ss Score
5.61
Exon sequences
Seq C1 exon
GTCCAAAGGACAGTAAAATAACCAGACTTTCCCAAAGTTCAAACAGAGAGCACTTGGTCCCTTGTGAGGATGTTCTTCTGACCAAGCCAGAAGGGATCATGCAGATCCCAAGAAATTCTCACAGAACTACTATGGG
Seq A exon
GTAAGGAAGTCATGATTATTATAATGGAAGAAGTGTGTGGAAAAAATTGCTTGACTGACATCAACACTTGGTACTTGCTTAAAACATTATTCTTCACCTTTTTTCCAAAAAGAATAGACTCTTAGGTAACCCCTAATCTATGGCTTTTAATATGGAAACAAAACAAAACAATATAAGAATGTCCTTGTTTATCAATTGTACTTTCTCAACAAAATAGACCATGTATTAGCAAAGTGAAAAGTCAAATCTTTACAAAGAATGTTGGAGGCTGATATAATGTATGTAAAATATTTGGGTACATAGTAGATACTTAATAAATGATGTGTGGGAGTTTGGGGCAAATTCTGGCACATATAGGTCCTTCAGATCTTATAAATTTTCAATCAGAATTTAAAACAATACACACAATTGGTCAGCCATTCATAATGTATGAACTTTATAAATTTTGGCAAATTACGTATTAGATAATAAAGTTGATATAATTTAAAGTACAAATCTTTCTCTCTCACAACCATAAGGAAACAGACACAAAAAATAAGGCTCACTGGGGGTCAATAACATTGATGCATTAATTTCTGAGCAAAATAACTAACAATATATTCTGTTTAGAAATAATTTCTGACTTTGTTTCATCTATGCCATAG
Seq C2 exon
TTGCCAATGGAGATTAGTAGCCCCTTTAAATCACATCATTCAGCTTAATATTATTAACTTCCCGATGAAGCCAACAACTTTTGTCTGTCATGGTCATCTGCGTGTTTACGAAGGATTTGGACCAGGAAAAAAATTAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187950:ENST00000318184:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.052 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(25.3=52.2)
A:
NA
C2:
PF0043115=CUB=FE(49.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAAAGGACAGTAAAATAACCAGAC
R:
TTCCTGGTCCAAATCCTTCGT
Band lengths:
263-907
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains